MmuINT0179305 @ mm9
Intron Retention
Gene
ENSMUSG00000051351 | Zfp46
Description
zinc finger protein 46 [Source:MGI Symbol;Acc:MGI:99192]
Coordinates
chr4:135842987-135849857:+
Coord C1 exon
chr4:135842987-135843230
Coord A exon
chr4:135843231-135845877
Coord C2 exon
chr4:135845878-135849857
Length
2647 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACTCTGCACCATCCTTACAGATT
3' ss Score
8.84
Exon sequences
Seq C1 exon
ATGAGACTTAATGCCACTGCCTTCTCGACATTTCTAACCATGTCTCTAATTTCAAGAAGAAAAGCTGGTTCTAAACTCCTAGATACCAAGTAGTGAGGAAGCGTTGTGTGATTTCAGGCCCCTGTGACATTTGAAGATATGGCCATGTACCTCACTCGGGAAGAATGGAGACCTCTGGATCCTACACAGAGAGATCTTTACAGGGATGTGATGCAGGAGAATTACGGAAATGTTGTCTCACTGG
Seq A exon
GTGAGTGAGGACTTTTATCTTGTCTTACCTCTTAGGGGTTTTGAAACTGTCAGAACGGCTTAGGTCTTTTCGATACAGCCTTGTTTGTTGTTAAGGAAAACCACACGGTTAGTTACCTGCTTTGGTGCTCATTCAAATCTTTAAGTGTGGGAAGATCCGTGTTTCCCAGTCTTAAATGAAAAGTAAAGTTTCTGCCGTTTCCGAGACTCTGAGGATTCTCGTGCCCTGAGTCATTAGCGGCTCTGTGGCCTGTTTGTACAGATTACTGACCAAACAGGTCTTACACTCTGGTGCTCGCCAGGACATAAATGCCCTATAAATGGTGCTTTTTCTCTGGGGCGCTGGAAGATGAGGGCTCTGAGGTGGGTTCACAGGAGGACAGAAACCTCCCTTCTATGTTTGTTTTGGCTCCATAGCTGCAGCGTTGCTTCAGGTACTTTAGGTCGGTTCTTGTCTAGAGATCTTTCAGAGGCGATCATCCTTCAAGTGTGTCTTCTTTCTTTTTCCTTTTATTATGTGTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCATCAGATTTCATTACGGATGGTTGTGAGCCACCATATGGCTGCTGGGATTTAAACTCAGGACCTTCAGAAGAGCAGCCAGTGCTTTTAACTGCTGAGCCATCTCTCCAGCCCCAGTCTTGTTTCAGAAGAACCACTGAATAGTCAGCTCACAGATCCTATTCAGAGGAGAAGTCGTGAGGCTGCAGATGCAGCTCGGTTGGTAGAGCGCTTGCTTAGCAGACTTGAAGCCCTGGGTTTCATCCTCAGTCCGGCATACAGCCAGACATAGGACTGAGATATTTTAAAATGTTTTTATTCTCAGAACAGAAGGCGACCTGACAGGTTTTCTTTGCTTGGACTCTCTCTCTCTCTGATGTCCCAGTTTCCTTGGAGTCTTCTTTTTATTTTTTATTCATTTTTAGGTGATACTAATAATGAGTTTCATTTTGACATTTTCATATACACGTGTCCAAACACTTGATCTGATTTGCTCCCCTCCCCTACTTCCTTGAGCTCTTGTCCCTTGAATTGTTCTTTAAAGGCAGCAACAACTCCAATACCAAACACAAAGTGAACAAATCCAGGAACAGGTGGAAGAGATGCCTCAAATGTTAAGAGTGGACATTGCTTTTGCTGAGGTGCTGAGTTCAGTTCCCAGTACCCATAGCAGGCACCTTACAACCACTGGTATTTCTAGCTCCAGGGGATTAGATGCCCTCTTCTGGCTCCTGAAGGCATATGCAATCACATGTACACATACTCCAACCTAGATGCATACACATAATTAAACGTGAAGTAAAGATTCAACAGCCATCACTATGTTATTTACTCAGACCTATTTTAAGTAGAACCTAACTATATCATCCCACCCAACAAAAAAAGAGAATGAGAAAAGAAAGAAAGGAGCGTCTTTTAAAAGATACACTCTTGAATCCCTACAGTCTGTCTCAGGAACATTTCTTAGATAGAATTACCAAAAGATTTTTTTCTTACCCAGATAAATGTAGGGGGAGGATTAGTAACTGTTTTCATTGTTTAGTTGCTCCTTGTAATGTGTGTGTATGTTCTGTCTGAGTGTGTGTTGTGTACCACGTGCATGCCTGGTGCCCATGGAGGCCACAAGAGGGTGTCAGATCCCCTGGAACTGGAGTTGCAAACAGTTGTGGGTGCTGGGAACTGAGCTCAGGTCCTCTGCAAGAGACCGTTGAGCCATCTCTCAGGCTCCTCAAGGTTGTTATCTCAGGGCTCCTTGGGTCCTTTAATGTATTATTAAACATTTGGATTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTGTGCACGTGTGATGGGGTAGATGCGTGTGTGTGCACATGGATGTGCAGATAACATTTGCCTGGGTGTAAGCCAGGGCTTCACTCTCAGCTCCTTCCTCTGTCCGTTTCCACCTTACTTTTGAGACACAGTCTCTCATTGGACCTGGAGCTAGCTCTTTCAGTGAGACTGGCGGGCAAGCCCCAGGATCCACTTGACCATCACCTTAAGCTCTGGGATTAATGGTATGTGCAGTTTTTATGTGTGTGCCTGATATCCCACACCAGATTCTAATGTTTGTACAACAAATACTTTCCTCTCTAAACTATCTTCCCAGCCTCTCTTAGGTTTTCAGTTTGTTTGTGGCTAGTTAGTAAACTAATTTACCCATAGGGTCTTTTCAGGGAACATACCTATTACATACAGTTTTCTCTCATGTACTAAGAAACCTGATTTGATGGGGTGATGGCGCACACCTTTAATTTCAGCAGTCGGGAGGCAGAGGTAGGTTGATCTTTGAGTTCTATGCCAGTCTGGTCCACAGAGCAAGTTCCAGGATAGCTAGGACTACATACAGAGAAACCCTGTTTTGAAAAACTAAGAGAGAGAGAGAGAGAGAGAGAGATAGCGAGCGAGCCAGAGCGAGAGCCAGCGCGCTCAGTACCAGGTGGGCGTGGTGGAGCTGAGCTTTAGAAATCCCAGGTTTACTCTCCAGCCCCGGGACTAGAGGGATAACTAACCGTCCTAGTCCAGCGTCTAGAACTCAGCAGGTATGGCCGTGCACTGACCTGACTCTGCACCATCCTTACAG
Seq C2 exon
ATTTTGAGATCAGGAGCGAGAATGAAGCCAACCCCAAACAGGAGTTTAGTGACGATGTGGAATTCGCGACCATGTCGGAAGAGCCTCTTGAGAATGCCGAGAAGAATCCTGGAAGCGAAGAGGCCTTCGAAAGTGGGGACCAGGCAGAAAGGCCGTGGGGAGACCTGACAGCGGAGGAGTGGGTCAGCTACCCTCTCCAGCAAGTCACTGACCTGCTTGTCCACAAGGAAGCGCACGCGGGCATCCGCTACCACATTTGTTCTCAGTGTGGGAAAGCCTTCAGTCAGATTTCAGACCTCAATCGCCACCAGAAGACGCACACGGGAGACAGGCCCTACAAGTGCTACGAGTGCGGGAAGGGCTTCAGCCGCAGCTCCCACCTCATCCAGCACCAGAGGACGCACACGGGCGAGCGGCCCTACGACTGCAACGAGTGCGGGAAAAGCTTCGGCCGCAGCTCGCACCTCATCCAGCACCAGACGATCCACACCGGCGAGAAGCCTCACAAGTGCACCGAGTGCGGCAAAAGCTTCTGCCGCCTCTCCCACCTCATCCAGCACCAGCGGACCCACAGCGGGGAGAAGCCGTACGAGTGCGAGGAGTGCGGCAAGAGCTTCAGCCGCAGCTCCCACCTCGCCCAGCACCAGCGGACTCACACGGGCGAGAAGCCCTACGAGTGCCACGAGTGCGGGCGGGGCTTCAGCGAGCGCTCCGACCTCATCAAGCACTACCGCGTGCACACCGGGGAGCGGCCCTACAAGTGCGACGAGTGCGGGAAGAACTTCAGCCAGAACTCCGACCTGGTGCGGCACCGCCGGGCGCACACCGGGGAGAAGCCCTACCACTGTAACGAGTGCGGGGAAAACTTCAGCCGCATCTCCCACCTCGTCCAGCACCAGCGGACTCACACGGGCGAGAAGCCGTACGAGTGCACGGCCTGCGGGAAGAGCTTCAGCCGCAGCTCGCACCTCATCACGCACCAGAAGATCCACACCGGGGAGAAGCCCTACGAGTGTAACGAGTGCTGGCGAAGCTTTGGGGAAAGGTCCGACCTCATCAAGCACCAGCGAACCCACACGGGAGAAAAGCCCTACGAATGTGTGCAGTGCGGAAAGGGCTTCACGCAGAGCTCCAACCTCATCACGCATCAGAGAGTGCACACAGGAGAGAAGCCTTACGAATGTACCGAGTGTGATAAGAGTTTCAGCCGGAGCTCAGCGCTTATTAAACACAAGAGAGTTCATACCGACTAGGCCCTGTAACCCCGGGTAAGAAAGGACTCGTTTGGAGGCCAAGTGACGTTTTGATATCAGCGGGCTTCCTTAAGACAGCTCTTTTGTTTTTAATGCTCTGGCTTCCCTAGTTATGGGCTACAGTCTAAAACACAAAAGAAAGCAACCCTTTTGAAATTCTGACCCACAGCTTCCAGGATGCTGTCCCCTCCTCCAAAACGGTGATGTTTATTCACTGATTATCATATGAATTGCTTCATCAAAGTCAGCCCCCTCCTTGAGAGCTGAAGACCAGAGGACAAGATGCTGGCGGATGCTCAGGCCTGGAGATGGAGTACATCTTTAATTTTTTTTTTTCTCTCTCGTATCTTTGACCCAGGAGAAATAGGATGGTCACAACTGCTTTGGCAGAAGGCAGGTGGCCTTGCCCTGAGCTGCAACTGTTGACAAGCTGTAGTGGCTGGGCTCACACACATCCCTTCCAAAGGGCTCTTTTTTTATTATTATTTTATTTTATTTTGAGTAGCTCACCTTCATATCTAAACCTCTCCTTGTGCACAGGATTCTGCCTGCTGAAAGCAGTGATCACAGGGTTTCTCCTTGTTTCTCACTTGGGTATAGCTTGCATGTTTTTGAAAGCTGACCGAAGATACAATGTAACAGGAAACGGGAAACTGGAGGCACAGGTTCAAGGACCAAGGGCCCATGGGCGGTGACGTCAGCAAGAGATAGCCATCGAGACTGCCATTCATCAGGCTTCTGTATTTTCTTCAATAATCACTTTAGGGATCCTAGCAGGGAAACTGCCTTTAGGAAAAGATAGGTCTGGAAGTCCTGGTGGAGTGGAAGTAGGAAGTGAACTGACCGCCCCAGGGAAGGGAGCCCAGAACTCTTCCCAGGGAACAGCAGTCGGTACTGTGGTCTTTGCCATCTAGCCTTTAAGATCACTCGCCCCTGCACTGCTAACTCTAGGGCTTGAGAGGGCCACACCCCAGTCTTTCTCTTAGCTTGCATAAAGGCATGCGTATGTACAGTAAAACGTGTATTCTGATAGCAGAATCTGAAGTCATAATCAGCATGTTCCTGCGTGATGTAGATCATAAGCTAGAACTGTAGACATAACTCTGATGTGAGAAGTGTCCTTTATTTTATTTTCTTTCTTTTGTTACGGAGAGAAAGGTTTAGCATCAGTGCTCAAGCACCATGCGCTCCTTAAGGTTTGGTTTTGTACAGAACTAAGCACTTGTGTGGATGTGTCCACCAGTGGCGAGAGAGTGACTGGACACTCAGGTCCTTGGCCTTCCTCAGACTGAATTATCTTCCGTGATGAGTGGCCTCATCCGAAGACACGAATAGACCTATGGAGGAATGTGTTTGCGGCGACACAAATAGTGAAACGAGTTGACCAGCGTAGCCCAGTACTTCAGTTCTCCTTAGATAGCCCAGATGTTGGTGCTTATTCAGCCCCGAGGGGATGGAGAGGAGTTGGCACCCAGGGAGCTGGGACTTCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGAGTGCGTGTATGAATTTAAAGAGTCCCAGTGTATTTCTATGGTGCTTTGTTGCAAAGTTGCAAGTGTAATTTTTATTATTATTATTTTTTTTTACTAAGAAAACCCTTTTTGTTAAAGTTCTTTAGGATTTGGCACTTAAAGCCCAGTGCTTTCGTCACAGAGAGTCACTGTGGCCACAGCTGGATGATACCATATCACTAGTGACAACCTGAAAAGCAACCGAAGGAGCAACCACTCAGAGGGCCTCTAAGTGGGCACTCCCATTAGAGGGCAGACTTGGGGCAGGGCACATGGTTTCTATTCTGTACAAAATGGAGCCTACTGTGGGTATTCATACTTTAACTGTTAGGTGACTACATGTTCTTGGTAACTAAACTCGGATGTATCTTCTGTATCAGTGCAGCCGATGACTTGGGTGCAGTTCAGCGGTCTCCCATTGCTTCTTTGAGCCTCATAAGTGTCTGCCTGGGAGTGGCTTGTAGAAGACAGACCCTCTGACCCAGCTTCATTGCACCCCGTTTCCCTCCTCGGTTCCTAAAACTAACACACACGCACACGTGCACACACACACATACACTAACACACACACATGCATACACACACACACACACACACACATACACACACACACGCACGCGCCTGTGCACCCCCACCATGACCACGCAGCCCCAGCCCTTGAAGGCTATGCTGAATCCCATTTGCTGCTTTTGCCTTCTAAGAGATGAAAGGTTCCCAGAAGGTTCCCGATGGCCTTCCCATCTCTTCATATCCGTACACTCCAGCTGGGTGGCTTAAAAGGCAGTGGCCGTGCCAGCTCAGTCCACTCCGCTGTGGTCAGCCGCTCCCCTCCCTGTGCTGAGCTGCGGAAGTCATACAAGCACCACACTTCACTTAACGCTATGTGCATGCCCTCTGTTCGCAAGTCCCTGGCCGTTTCTGCACACACCAGACAGTCTGTGCCTGTGTTCTATGGTTGTGGAGAGTGGATGAGCAGATAAATCTGTAGAGCAGATTCCCTTGGTATTGGTCAACCATCCTAGTGTCTTGTCTATAGCTGTATTATCTTAACAATATTCTATAATTAAAGGTATAATTTTTAAACTCAAAACCACTGAGTTATCTTGGTAATCTCAAACTCATTGATAGTAGAGCCTCTCATTTTCATGAGATTCATTAAAATCGTGCATGATCATCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051351-Zfp46:NM_009557:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.283
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: