BtaINT0165692 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54942747-54943211:-
Coord C1 exon
chr18:54943153-54943211
Coord A exon
chr18:54942907-54943152
Coord C2 exon
chr18:54942747-54942906
Length
246 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCTGACACGTCTCCCCGCAGTCA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGTGGAAATATCTACCGGCTCCCCCACCCGATGAAGGAGGAGAACGTGGCCAGCGGCTG
Seq A exon
GTAAGTGCAGTAGCCCCTCCCTGCCCGGCCGGGGGAGCTCAGCACCCCCGGGAGTTCCCTGCTGGCTCTGACCTGCTGCCCAGGGGCGAGCTGTGGGTGCTGCCCTCCTGAAGGGGCAAGCACCAGGCCGTGGGGGATCGGGGCATCGTCTCCTTTCCTTCAGTTCACCCGCAGCTGTCAGGGTATCCAGGCTTGGGGATGGAGCCCCATTCTCCCTTTCCTGCCTCCTGACACGTCTCCCCGCAG
Seq C2 exon
TCACCAGCACAACAGGGGCTCCACAGACTGGGCAGAGCCAAGGAGCACGTACATTTGCAAGAACTGCAGCCAGATGTTCTATACAGAGAAGGGGCTGAACAGCCACATGTGTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606:ENSBTAT00000061246:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATCTACCGGCTCCCCCAC
R:
CTGTGGATCCTGCTTCCCTCG
Band lengths:
213-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development