GgaINT0002389 @ galGal3
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:733790-734360:-
Coord C1 exon
chrUn_random:734302-734360
Coord A exon
chrUn_random:733992-734301
Coord C2 exon
chrUn_random:733790-733991
Length
310 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTCCGTGTTTCCCTCTTAGTGC
3' ss Score
10.22
Exon sequences
Seq C1 exon
GGGGGAAACATCTGCAGCTTCCCAGGCACGGCGCAGGAGGACGGCGCGTCGGCCGCGAG
Seq A exon
GTGAGCGGTTGTGCTGAGCTCACTGTTTTCCTTTCAGTCGCTGAAGCGCTCACAGCAGCTCCACGTAACATCCCCTTTGGCTGTATGTTGTGCTAATTAATAGGCGTGTAAATGGGAGCCATGAGAACCTCGGTTGTGCCTCACAGTCGTACCCTTTGCGTGGCCAAATGACCCCGAGAGGTCCCCCTGTGCTCTGGCTCTCGCAGGGGAGATGCAGGCCTGCACTGAACACACTGATGAGCCATGTGTTTCTTTTCTAAAGGGAACGGTGCTGATTTTCCTTCCCTTTATCTCCGTGTTTCCCTCTTAG
Seq C2 exon
TGCTACGAGCAGCGCTGCTCCCACCAACAGCAGCGACTGCGACGGCGTTTTTCTATGCAAGAACTGCCACCAGGTGTTCTACACCCAGAAGGGCCTGGGCAGCCACATGTGCTTCCGTGACGAGCAGTGGCTGCTGCCCCAGAGGAGAGAGGAGCCGCAGGTGAAGGGAAAGCAGAGGGGTCGGGGCGCTCAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAACATCTGCAGCTTCCC
R:
CTTTCTGAGCGCCCCGAC
Band lengths:
254-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]