RnoINT0168389 @ rn6
Intron Retention
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77977187-77977727:+
Coord C1 exon
chr1:77977187-77977245
Coord A exon
chr1:77977246-77977567
Coord C2 exon
chr1:77977568-77977727
Length
322 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCTGCCTTCTCTATCAACAGCCA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGTGGAAACATCTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
Seq A exon
GTAAGTTTAGGAGCTCTCATGCCCCACCAAAGCACTCCACTGGAAAGTCCTCTAGACTCTCTGTACTGTCTAAAGAGTGAGGGAGCCAGATGCCTCTAGCCCTGCAGAGGACATTTCAGCCCTTGGAAAATTGAATATGGTCTTCCATTTTCATTGTTTAGTACAAGTTTTCAGTGGATTGGGGTTACATGCAAAAAAAAACAAACAAACAAAAACAACCACAAAACCCAAACCAAACCAATAGCGAAGACAGCAACAACAAAGCAGCAGTCAGGGCTAGAGCCTCATTCTCCCATTCTCCCTCTGCCTTCTCTATCAACAG
Seq C2 exon
CCATCAGCCAAATGGGACTCCCACAGATTGGATGGAGTCAAAGAGCACTTTTGTGTGCAAGAATTGCAGCCAGATGTTTTACACAGAGAAAGGGCTGAGCAGCCACATGTGTTTCCATAGTGACCAGTGGCCATCACCTCGAGGGAAGCAGGAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800:ENSRNOT00000058241:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACATCTACAGACTCCCCC
R:
CTGTTGCTCCTGCTTCCCTC
Band lengths:
216-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]