HsaINT0187579 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48043433-48044208:-
Coord C1 exon
chr19:48044150-48044208
Coord A exon
chr19:48043593-48044149
Coord C2 exon
chr19:48043433-48043592
Length
557 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTTCCTGCCATGTCCCACAGTAA
3' ss Score
8.1
Exon sequences
Seq C1 exon
GGTGGAAACATCTACAGGCTCCCCCATCCGGTGAAGGAAGAGAATGTGGCAGGCAGAGG
Seq A exon
GTAAGTTAAGAAGCCCCCGATCCTGCATGCACCCTGGCAGGAGTCCTCTGGCCTTCCTGTGCCGGCCCTGGACAAGTGAGTGGGGAGGATGCTTTCAGTCCTAATGGGATTAGGGTACAGCCTCCATTTTATAGGGTTTATCAAGAGTAGTCAGGCTGGACGCGGTGGCTCACGCCTGTAATCCCAGCACTTCAGGAGGCTGAGGCAGGGGGATCATTTGAGGTCAGGAATTCGAGACCAGCCTGGCCAACATGGTGAAACTCTGTCTCTACTAGAAATATAAAAATTAGCCACGTATATTGGCACACACCTGTAATCTTAGCTACTTGGGAGGCTGAGGCACGAAAATCACTTGAACCCAGGAGGTGGAGGTTACAGTGAGCCGAGATGGTGCCACCGCACTCCAGTCTGGGCAACAGAGTGAGACTCCATCTCCAAAAAAAAAAAAAAGTCAGTGGATTGGAGTTATAGACAAAAAAGAAAAAAAAACAACAAAAAATCAGTGATCAAGGACAGAGTCCTAATCTCCCACTCTTCTTTCCTGCCATGTCCCACAG
Seq C2 exon
TAACCAGCAAAACGGCAGTCCCACAGACTGGACGAAGCCCAGGAGCACTTTTGTCTGCAAGAACTGCAGCCAGATGTTTTATACGGAGAAAGGGCTGAGCAGCCACATGTGTTTTCACAGCGACCAGTGGCCGTCACCTCGAGGGAAGCAGGAACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.454
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAACATCTACAGGCTCC
R:
GTTCCTGCTTCCCTCGAGGT
Band lengths:
214-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)