BtaINT0165722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009521 | ZNF565
Description
Bos taurus zinc finger protein 565 (ZNF565), mRNA. [Source:RefSeq mRNA;Acc:NM_001102216]
Coordinates
chr18:47018467-47025699:-
Coord C1 exon
chr18:47025604-47025699
Coord A exon
chr18:47019903-47025603
Coord C2 exon
chr18:47018467-47019902
Length
5701 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TACTTTTTTTCATTTTGCAGACC
3' ss Score
10.44
Exon sequences
Seq C1 exon
GACTTTCCATTTCTAAGCCCGATGTTGTCTCCTTACTGGAGCAAGGGAAGGAACCCTGGATGGTTGTGAATGATATGACAGGACCATGGTGCCCAG
Seq A exon
GTGAGTGAGAGCTGATCCAGTGGTGGGAAGTCACTGGCAATGACAGCCCTGCAGGAGTGTTAACTCATCACAGTAACTTGAGTTATTGTTAGGAAACTCCCTCAAAACCCTGCTAAGGAAGAAAAGCCTGAGACATGAGGCCATAAACAGAGCATCCACTTCCAAGGGAACCTCACCCTTATCCCCATTAACTCCTTCTTGTTCTTTCTTCTCTCATGTTTCATCTCATTTCAAAAAGGAATGTGCCCCTCTTTCTTTCTTTTCACCTGTTCTTAGCATCATTTTTTCTGCAAATGTCTTCATTCCTTAAAAAATACTTATTTTCTTAAAGCAGCTTCTTGCTTTACCTAATTTAGCAATCCATTTATTCTCTTACCTTTTGAGAGGTTAGGATGTAGAATGACTGAGGGAATACTCTAGAATCAGATTTTGTGAGTTCATATCCTAGCTCAGTCACTTACTAGATCTATGAGTTTAGGTCAGTTACTTCAATTCTCTGTGCTTCAGTTTTCTCCTCTGCAAATATGATTAAAAATAGTGCCTTCCTCATGTAGTTATTGTGGCTTCTTTGTGAGTTAGTATGTGAAAATGCCCAGAACAATGCCAGGCCATAACAATAACTAAATAAATGTTAGCAAGTATTTGTAACTGGCACTTGCTCGATAGAGTTGGAGCCTTTGAATACTTGGTTATCAGTTACAACCTCCTGACTTCTTTGTATTGTTGTCATTAATTTCCCTCTGGGAGCATTTTTTCCTCTATCTGAAGAACACCCTTAAGATTTCCTTTTGTGTAGGTCTGCTGTTGACAAATTCTCTCAGTTTCTGACCACGTGAAAATGTCTTTATTCTACCTTCTTTCTTGTAGGATATTTTCACTGAGTATGGAAATCTGTGTTGGCAAGAGTTTTTTCTCAGCCCAAAGAACTCATTCCACTGCCTTTTTTCTTCCAGTGTTGTCAATAAGTTAAGTTGTTCCAGTTTGGGGAAATATTCCATGTGTATTTAAAACTAGTGTTCTTTGGATGGTACATTCACCTCTTTAAGCCTTTTTATTATATGGTTTAGAGTCTGGATGTCCTTTTAACGTTCTCTGTACTTGTACTGTCAAATTTGGAGAGCTGTTAATTGTATTATATATTTTGCTACTACATACAACATTTTTATTAATATAAAGGTGAAATATAGATCCTTGTTGCAAATTGTATTTGCAGTACAGTCCATCCTTCATTTTGCCACTTAATGCTTTTATTCTTGAATTCTAGTTTTTCTGATATTAATATAAAGTGCCCTGTTTTTGTTAGTTTAAAAAATTATGGTGTATCTTTGCTTATCCTTTTTAAAAATTGCCATTTTAAGTGTGTCCCTATAATCAGAATTAGTTTGCTTTTTTAATCAATTTTAATAGAATTTAATCCATTCTCATTTGTGATCATTCATATGTCTATTCTTATTCCTGCTGTCTTATTTTATATTTTCTGTTCCTCATTCTTTTTATTTGTTTCCTTCACATTTTATTGCCTTTCAAGCAATTTAGAGGTACAATAATCTTTAACTTGACTTTCAAGAAATGTGCTTAAACCTGCATTTCTCTTCCCACCTAAAGACTGAAATAGGATTTTTTTCCATTTAGTAAAAATTTTGTTTTTAAATATTTGTTTACTTAATTATTTGGCTGCACAGGATCTTTAATTGGCAGTACAGGAGCTCTTAACTGCAGCATGTGAGAGCTAACCCAGGGACTGAACCAAGCCCCCTGCACTGGGAGCTCAGAGTCCTAGCCACTGGACCATGAGGGAAGTCCTTCTTTCTGGTAAATTTTTTTTCTGAAATATTTTGAAATCATTTTAGTTTAGACTTGTAGAAAATTTGCAAAATTATTATAAGGAATTCCCAAATACCCTCCACTCAGCTTCCCAGGGTTAAAATTTTATATAATCATAGTATAGTTATCAAAGCCAGGAAATTAACATCGGTATAGTACTATTAACTGATCTACAGATCTTATTAGAATTTCATCAGTTTTTCCCCTGATGTCCTTCTTCTACACCAGGATCCAGTCTGGGATCCCACATTGCATTTAACTGTTGTGTCTCCTTAGCATCCTCCACTCTGTGACAATTCCTGTCTTTCATGAGCTTGATCCTTTTGATGAGTTCTCTTTTGGAGAATGTCTCTCACTTGCGTTTGTCTGGTATTTTCTACAATTAGACTGAAGTTATGCGTCTTTGGCAGGAATACCACAGAAGTGATATTGTGTCCTTCTCTGTGCATCATATCAGGGACTGCAACCCCCAATATGATGTTAATATCACTGGTAGTGTTAATTTGATCAACTTGGTTAAGGTTTCTTCCATATTTCTTTCCTGTAAGGTTACTACTTTTCCAACTGTAATTGGTAATTATCTTGGAGGGAGATACTTCGCAGCTACAGAGATATGCTATTTCTCCTCACTTTGCCCACTATAATTTTAGTGTCCATCTTATCTATAACAGTTAATACAGAAGTGTTGCTGTGTGTTGATTTTGGGTCCCTTATTTCCCCTGCATTTATTAATTGGAATTCTTCTGTGTGAAAGGGCTTTCCCTACCCCCTTTCCCATTCACCTGCTTATTCAGAGATTTACTTCTATCAGTATAGGCTATTTATTTATTTATGTATCCTATGAGTTGTAGTTCAGAAATACCATTGTTTATTTTGTTGTTCAAATTGCTCATTGGGAAAGCTTTGGCCATTTGGGAACATCTTCAGGTTGACTCCTATGTTCTTTTGGCATTCCCTCTTCCTGTTTTTGACTACTTCCTTATTTTGTGGTGCTTACAACATACTCTGGGTTTATCCTGTGTCTTTCTTGCCTCACTCCTGAAATCAGCCACTCCTCAAAGGAGACCTGGTTTCTTTGATTGGATGGTATGAAATAGTATCTTTGAAATTCTTTTTCTGAGCAAAGTAAGACCTTAAGACCTTTACCATCTTTTACTCTACTATGACCTAGACCAGGGGTTGGCATACTACAATCTACGGGTCATGTCCAGCTTGTGGCCAGTTTTTTGTACCATCCCCAAGCTAACAATGGCTTATACATTTCATAAGAGTTTAAAATTATATATATGTGACATACACTTTATGTAGTCCATAAAACCTAAAAAAAAATTTACTATGTAGGCCTTTACAGAAAAAGTTTGCCACCTCTGCTTGGATTCACCCCACTCTAATCTTGTTTTAGTGATCTGAAATTCTTGCTTCATACTGTCATTTTTATAATTTATAAATGTATAGTTTGCATTATTCTTAACAGTAATGATATAAATCAGTCATCTGCACACTTTGAACTATGGGCCAAATCTGTCCTGCTACCTGTCTTTATATAGCCTATGAGCCTGTTGAATTCTGTAAATGCCTTGTAAGAGCGGCATATACATAATTAAAATCATATGCTTATGGATTTATATCAGTATTTGGTAGAACTATCTATATGAAACATTTTCAAAAGTGAAGTACATAAAATCTGATTATAGATCAGCACTAACAGATAAATATTTACCATCAGTTCTGATGCTGGAGAGCACTAACCTTGAATTCCAGTTAAGTGAAATGTTACCTCCTGCAGAAAAGAATTCTATGCTTCTCATTCTTTGACCTGTATTAAAAAAAAAAATTATTATGCTTTGAATTTCATCAATAAAAAATGTGTAGCAATTTGTTTTCTCTTTTATTATGTAAGTGCCTACATAACATCCTCATTTTTGTCTCTTGAACCACAAAGCCTAAAATAATTATCATCTGGCCTTATAAAGAAAATCCAGCCCCTGATTCAGAGATGCAGTTGAAAGTCCATGTTTGAGGACAAAAGTATATATAATCAAAACTATATTTTCCATGCACTTAAATTAGCCTTAAATTAGCAAGACATCTGTACTTCAAAGCTCAGAAACCAAGAACCAGATTTCTGGTTCTCTTTGTACTTGGCTCTATCTTACATTTCCCTGGAAGACTGGACTCCAGAGTTAAGACTGAATAGTCATGATACATTGAGTTACTCAGTGTTTTCTTTCTGTGTGTATTAGGTTCCTACCCTTGTATAACACATTACCACAAACTTGGTGGTTTAAAACAACACATGTATTTTCTCACAGTCCTAGAGATTAGAAATCCAAAATATATCTCACTGGGGTAAATTCAGGGTGTCCAAAGGGCTTATTCCTTTGTGTAGGCTGTAGGTAAAGATCGGTTTTCTTGCCCTTTTCCAGCTTCTAGAGGCCACCTGCATTTCTTGGATCATAGTCCCCTTCCATCATCATCTTCTTCTTTTTTTTTTTTAATGGCTACACCACACAGCTTGCAGGATTGACCAGGGAAACCCATACCCTGGGCAGTGAAAGTGCTGAGAGCTTTTGAAAGTGTGTTTTAATCTGAGACCTGAAGAGAAAATCAGCCATGTAAAGGGTCCAGGACAGGATTCCTGATAGAGATCTAAGATGGAAAAGACCTAGATTTATTCTAGATGCTCAAAGGAGGGCTGTGGTTTGTTACTTGGGGAGGAAAGGGGAGAGTACTCAATTTGAAGACGCATTGTCTTTGGTGGAGATAGAGCAACAGAATGACTACAAGGACAAGCAGGGACCTGCTTTGCCAAAAACCTGTGAACCATGGCACTGAATTTGAAATTTATTCTAAGTGCAGTGGGGAGGCTATGAAAAAGTTTAAGCAGAGGTTTTCATTTGATTGGCACTAGCATCACATGGCAGAAAGTGTTAAAAATATAGATGCCTTATTTGTATGAAATGCCCTGAAAGGCAAATCCATAGAGAGAGAATTAGTGTTGCTCTGCCATTAGTGATTGCCAGGGGCTGGAGGGACTGGAGAATGGGGAGTGGCTGCTTAATGGGCACAGGGTTTCTTTCTTTCTTTTTATTGAAATACAGTTGATTTACATGTTTTGTTAGTTTCTGCTGTACAATAAAGTGATTGTTATATATATATCTGTGTGTATGTATATGTATATTCTTTTCATATTCTTTTCCATTATGATTTATTACAGGAAATTGAATATAGTGCTATACAGTAGGACCTTGTTCTTTATCCATTTTATATATAATAGTTTGCATCTGTTTGTCCCAAACTCCCATCCCAGCCCTCCCCCGCGCCCCCTTCCACAAGTCTCTTCTCTGTGTCTGTGAGTCTGTGGCACAGTGTTTTTATTTGGAGTGATGAGAACGTTCTGGAGCTAGGTAGTGACAGTGATTGCATGACACTGGAAATGTACTCTAAACCACTGAATTTTACACTTTAAAATGATTAAATGAGAAATTTCACGTTATGTGAATCTTAACTTTGTATTTCGAGAAGTATGTACACACATGTCTTGTGCCTACACCTGAAGATTTTGGTTCAGTGTGGGGTGGTTCTTGAAGAACATTTCTTTTGTTACAAGGCTTTCTGGACGATTCTGTCCTCTGGCAGAACTGAGAACCACCGGTTTAACTTGTTTTCTTATTCCTTTCTGGCACCATGTGAGGTCTCATCATATCTGTGCCTTCATGTGCTTTTTAGACATTGCACAGCAATATTTGAGGCTTACACAAGCAGTTCACCAATTATGGTGATTATTTTCATTCTTGTCTCTCTAATCTACTGGAGAATTTTTAAATTTCTCTTAGAGGGAAAGAACAAGTTGTATTTACTTTTTTTCATTTTGCAG
Seq C2 exon
ACCTGGAGTCAAGATGTAAGACATTTCTGCAGAAAGATACCTTTGAAGTCATGTCATTCAATTGGGAGCTAATGGAAAGCCTTCAGTGCTATGGTGAAGACTGGGCATACAAAGGCCAGTTTGAAAAACAACAAGTAAATCATGAGTGCTGTTTTAAGCAAGTGAAGATCACCTATGGAAACATGCCCACTTTTGAGTGTGGGCATACATCACTCACCCTACATCCCAGCAGTGAGACTGGTGAGAAATCGATTGAATGTAATGAATGTGGGAAAGCATTCAGCCGTGGCTCACACCTTATTCAACATCAGAAAACTCACACTGGTGAAAAGCCCTTTGAATGTAAGGAATGTGGGAAGGCCTTCAGTCGTACCTCACACCTTGTTCAACATCAGAGAATTCATACAGGTGAGAAACCTTATGACTGCAAGGAGTGTGGGAAGGCCTTCGGTCGAACTTCAGAACTCATTCTCCATCAGAGACTTCATACAGGTGTCAAACCTTACGAATGTAAAGAATGTGGAAAGACCTTTCGACAGCATTCACAACTTATTCTGCATCATAGGACTCATACAGGTGAGAAACCCTACGTCTGTAAAGACTGTGGCAAGGCTTTTATTCGTGGCTCACAACTTACTGTTCATCGGCGAATTCATACAGGTGCTAGACCCTATCAGTGTAAAGAATGTGGGAAGGCCTTTAGACAGCATTCACAACTTACTGTACATCAGAGAATTCATACCGGGGAGAAACCCTATGAATGTAAGGAATGTGGCAAGGGCTTTATTCATAGCTCAGAAGTTACTCGACATCAAAGAATTCATTCTGGGGAGAAACCCTATGAATGCAAAGAATGTGGGAAGGCCTTTAGACAGCATGCACAGCTTACACGACATCAGAGAGTTCATACAGGTGACAGACCCTATGAGTGTAAGGACTGTGGAAAGGCCTTCAGTCGTAGTTCATACCTTATTCAACATCAAAGAATTCATACAGGTGACAAGCCCTATGAATGCAAGGAATGTGGGAAAGCCTTTATTCGTGTTTCACAACTGACTCATCACCAGCGAATTCATACTTGTGAGAAACCCTATCAATGTAGGGAATGTGGAATGGCCTTCATTCGTAGTTCACAACTTACTGAACATCAGAGAATTCATCCTGGTATCAAACCTTATGAATGTAGAGAATGTGGGCAGGCCTTTATTCTTGGCTCACAGCTCATCGAACACTACAGAATCCACACTGGCTAGAAAGCCTTGGTGTTAGGGACGTAGGGAAGCCTTTATGTGGAATTCATGCCTCGCTCAGTAGTAAATAATGCATAATGTAATGTAATTATTGTCAGAGAACCTTCATTTGTCACTTCTATTGTGGAACATCAGGTAACTCATACCACAAGAAAATTCAATAAATGTGGGAATTCTTTTTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009521:ENSBTAT00000012529:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0403211=Rpr2=WD(100=13.6),PF134651=zf-H2C2_2=WD(100=6.0),PF097235=Zn-ribbon_8=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development