MmuINT0070757 @ mm10
Intron Retention
Gene
ENSMUSG00000066647 | Gm5113
Description
predicted gene 5113 [Source:MGI Symbol;Acc:MGI:3644651]
Coordinates
chr7:30175851-30182324:+
Coord C1 exon
chr7:30175851-30175946
Coord A exon
chr7:30175947-30177643
Coord C2 exon
chr7:30177644-30182324
Length
1697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTTTATCTGATTTTTCAGACT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GACTTGTCATTTTTAAGCCTGATGTCGTCTTCTTATTGGAGCAAGGGAAAGAGCCATGGACGGTTACAAATTATATGACAAATCCTTGGCACCCAG
Seq A exon
GTAAGTAAGACCTGGCCTTGCTGGAGAAGTCATGGGGCTAACAGGACAGTGTGGTAGCAATACAGCTGACAGCTGTCACCTGAGTGATTGTCAGGAAGCCGACAAAACCTGCTGTAGAATAAAGGCCTGAGTTACAGAGAAGAGCAAGGACTCTGTCAGCATTGGCCAAGCACATAAGATTAAAATAATTAAAAGTATTCTGTATTAGATGGTATTTACTTCCACTGCCTTCTATCTTCTGTTGTTGCTAACTTAGGTAGCTATAAATTCGGAAAATATTTCATGCATATTTATTGTTTTATTTTACTTTATGTGTATGGGTGTTTTGCCTGCATGTGTGTCTACACCATGTACATGCCTGGTTCCCCAAGGAGGCCAGAAGAGGGCATTGGATTCCTTGGAACTGGAGTTGCAGATGGTTGTGAGCCACCATGTGGGTACAGAGAACTGAATCCGGGTCCTTTGGAAGAGCAGCCAGGGCTCTTGACCAGTGAGCCACCTTGTACATGGATGTAAGGACACAATCCGTAAGAACAAGAAAGACCTCTTCTTTAACATCTTTATTGCATGAGCTGTCTGCCTCGCTCACTTTGACCTCCCTCAGCCAGAACTCCAGCTCTTTACCCTCCAGCACCCTGCCTGCCTAGCTCAGGAACTTGCTCGACGCACGCCATGCCATGCAGGAAGCCTGTTCTGCTGCAGCTGCGCCTCCAGAGAAGGCTGCTTCCTGCTTCCGCGGTGTTCTTTTCCTTTTTGTTTAAAATCCCTTCCTCCTCGAGAGTCAGCTTCTAGGTGCTGCGCAGTGTGGGTGTGCTGTCTGTCAGCTCATCGTTCGATGTGCCACGGACAACATCATTGATCTTGTTTTGCTGTTATGATCCAGGAAGGTTCTCCACCTCCAGTCTCTGGGCATTGTACTTTGTATTGCCTCCTCAAGCTCCGACAGGATATATGCCAATGGCCAGTGGTGTTGACAGCACGTTGTCCCAGCTCAAACCCCCTCTCATGGTAGAGTTTTCTCTTGCCCCACGTGTCTTGTGCCAGTTGTCTCACAAGATGCCCATCACCTGTCACTGGCTATAAAGAGCTTTATTTTTTGGTTTTGGTTTTGGATTTGTTTATTTGTTTTTCGAGACAGGGTTTCTCTGAATATCCCTGGCTGTCCTAGAACTCACTGTGTAGACCAGGCTGGCCTGGAACTCAGAGACCCACCTCCCTCGGGCTCCTGAGTGCTGGGATTAAAGGTGTGTCCTACTCCAAACAGCTCTTACACAATTTTGCAGTTAGTACAAGTCTGTTCACTTGTCACCCTTATTTCCAGCTGTCCCTGCTTTGCGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGACCAGGAAGACACATGGACATTTGTACAGGTAATGAATTTTGTGGGTAACTCTGATCAATTTCAAAATTGAGAACCTTAGGCTTAACTCTTTTCTTGCCCAGTTCTGGCATCATGGGCACTTCTACCAAATTTGTGCTTTCTAGAAATTATTCAATATTTGAGACATCTTACGCCATTAATCCTTTATGATGAAATTTTAAATTTTATTTCCATATTTTCTCTCTTTTTTTTAATTCCTCATGGTAAAAAAAACAACTCATATTTGTTTTTTTTTTATCTGATTTTTCAG
Seq C2 exon
ACTTGAAGACAAAGTGTGAGAGAGTTCCCAGGAAAGGGCTCTTTGAATAGAGTCATTCAAATGGGAGGTAACGGGAAGCTAGCAGCACCGTGACTTTCAGGACCCTCACCTCACAGATGCCTGGGCGTGCAGAGACCGCTGTGAGAGACAGCGCACAAGTCAGGAGTGTCATTTCAAGCAAGTGGAAACCCCTGGAAAAGTGTCCCTGCTCTCCAGCGTCACACACGGCATGGGAGCGGCAGGACTGCAGTAGAGAAAGTGACCTGACCGGATGCAGTGAGCTCGAGGAAGCAGGGAAGCGTTTAGCTGTGGCTTGAGCCTTACTCAGCACCTCAGCAGTTGAAAAGCCCTTTGAGTGTAAGGGGTATGGGAGAGCTTTTGCTCAGGCCTCACACCTTGTCCAGCATCAGAGAATCCATTCAGATGAGAAGCTCTATGGGTGCTGGGCGTGTGGCCATCCTTCAGACCTCAGTCTCCATCAGAGACTTCCTGCTAGCGTCAAACACTATGCATGCAAAGACTGTACAAGGACCTTTAGGCAACAGTCGAAGCTCATTCTGCATCCAAGAACTCACCCTGATGAGAAGCCCCATGTCTGTGAAGACCGTGGGAAGGCTTCATTCGTGGTTCCCTGCTTACTGTACATTGGAGAATCCACACTGGGGCTCGGCCCTATCAGTGTAAAGACTGCGGAAAGGCCTTCAGCCAACACCCCAGCTCACCGTACACCAGCGAATTTACACTGGAGAGAAGCCCTACGAATGTAAGGACTGTGGGAAGGGTTTTAGCCACAGCTCAGAAGTCACTCGACATCAAAGGATTCATTCTGGGGAGAAACCCTATGAATGCCAGGAATGTGGGAAGGCCTTCAGACAGCATGCGCAGCTCAGGCCACATCAGCCATCAGAGCGTCCACACTGGTGACAGACCCTTGGCATGTAAGGACTGTGGAAAGTCGTAGTTCGTACCTTATTCAACATCAGAGGATCCTTATGAGTGTCAGGAGTGTGAGAAAGCCTTTATCGGTGTCTCCCAGCTCACTTACCATCAGAGAATTCATACATACGAGAAGCCCTGCCTATGCAGGAAGTGCGGAATGGCTTTTATTCGTAGTTCACAACTTACTGAACATCACAGAATTCATCCTGGTGTCAAACCCTATGAGTGTGGAGAGTGTGGGCAGGCCTTTATCCGTGGCTCTCAGCTCATTGACCACTACCGAGTTCATTCCGACTGGAGTCCTTAACATTAGTGGTGTGCTTATTCAATAGTCTCTATTCAAAGTTGACCTCTGGCCAGGGTTACATTGCCCCCAGTGTAACTAATGTTGGGAGAACTTTGTTCATCTCGTTTGTTACAGGTTATCAGAAAACGCAATACCAGGAGAAAGACCCATTAATGTGGAAATCCTATTTTCCTCGTTCACTGGTTACTAAGCAGCAGCAAACCTGTGCTAAAAAATAGCTTGATATGAATGTAGAGAAGGCATTTATTACCTATCAAAATATGTTCAGTTTCTGAGAATCCCACATAGATGGCCATGCTGCTTAAAAGATTTTTTAAAAAGATTTATTTATTTATTTATTTTATGTATACGAGTAAACTGTTGTTGTCTTCAGACACACCAAAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACCGAGCCATCTCTCCAGCATCCCCCCCTCCCTTTTTAAGATTTATTTAAAAAGATTATTTGTTTGGTGTGTTGCGAGTAATGACTGTGCCTTTGGGCGGGCGTGGCTTAGACCTGAATTTGTTCTCACCCCCACTGGTTACTGATGTCATTGAAGTTACTGTGCAATTTTGTCCTTCTTTGACCCTTACTTCTTTTTTCTCTTGGTATTTATTTGTTTTTTAAGGGAGAATCTCATAGAACCTCAGCTGGTCTCAAAATTATTATGTGGCTGAGGATGTCTTTGAACTCCTGATCCTCCTGCCTACGCCTCCCAAATTATAGGCTTGCATGACCATGCCCAGCTAATAATGTCTTAGGTTTTGCATTTTGTTTCGTTTAGTTTGAGGGAAGGAGTTGTTTTTATTTTGGTTTGGTTTGGTTTGGTTTGGCTTGGCTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGCTTGGTTTGGTTTTTAGAAGAGACTGTCCTAACATGTAGAAGACCTCCATGGTGTACTTTGCCGTGCATCTGCCACCGTGGCATTCCCTGCAATCCGTAATTAAGATTGAGAGACTTAGTTGGATGTGGTGGCTCATGTCCTCTGGGCCTAGCACTCTGGAGGCAGAAGCAAGTGATCCAGACAAGCCAAGGCTGCAGAGTGAGACCCTGCCTCAAAAAGGGAGGGGCATTGGAGGGATGGCCAGCCATTAAGAGCCCTTGTTGCTTCTGCAGAAGACCGGAGTTTGGTTCCCAGCATTGTGGTTCACGACCACCCATAACTCATAACTCCAGTTTCAGGGGATCCAGGATCCACTTCTGGCCTCTCCAGTCACCAGCATGTACCTGGTGCACATAAATTATATACAGCTTTAAAACAAACAAAAACAAAAACCAAAAAAAAAAAAAACCTTGAACTCCAAAATGAACATGGACAGTACTTTCTGCTTACTTTGGGAGTTGGGAAATGGAACAAGTCAGGTTCTCATGTAGCCCAGGCTAGCCTCAGAGTTCCTCTACAGCTAAGGATAAAGTAGAACTAGTCCTCCTGACTCTACCTCCCAAGTGTTGAGATCACAGATATTTGCCACAGTTTTAAATATTTATTTATAAAACCTAAAACTCAGGGACTCAGAGAGAGGAGATGCATAGGAGGGGCGGGGTACACAGACTGGAACCGCTTTCCTCTCAGCGCCAGCCAGTTTCCTTTTTGTTTTTTCAAGACAGGGTCTTTCTGTGTACCCCTGGCTGTCTACCACTTGTTCTGTAGACTGGGCTAGCCTTCAACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTGAAGTGTACCACCAATGCCCAGGCACTAGCCATCTACCTAATCCTTTAATACAGTCACAGTCCTGGAGCCTGCCAAAGGGCTATTTAATTACATATTAAGGTATTTAATTATGGACAATAAGTGATTCCAACATCTCCCAAACACCCCCTCCCTAGAAGCCCAGGATACTGAGAGCTGGATGCCCTTTCTCTGTGCCTTGGTCTTTCTGGTGCCCAGGCTCATACTCAACCTATTTGCGGGCCACCAGATATCAATGCATAAGTAACATCGTCAATCCTTCTAATGGTTCAAAGAATCTCAGGAGCTGGGTACTAGGAGCTGGAGGCAAAGACAAAGATGTATTTTCTGTTACACAGCGGCTACCTTCATTCAAACAGAAGTACTAGTGGGTTTCGTTTTGTGGCAGAGTCCCTCTATACAGCCTTGGCTATCCTGGAACTCAAAACCACCCTGCCTAAGCCTCCCACAAGGTTTATAGGTGTGAACTTATGGCATACCTTAAAGCACTTTGGGGGCATCTGCTTTCCTACATTGGAAACATTTTAAAATGACAATTGTAAGCCTGGTTTGTGATACTTGGTTGAGACTACAATAGTCAGCAGGGTGAGACGTGAGAATCCCGAGTTCCAGGCAGGCCTGAATTATGTGGCAAGACCCTGTCTGGGGGACAAAGTGGGAGGGGGCATCGCAGAGTAGGGTTGAAAATGTAAATCCAGAATTATCAGATTCGTGGAAGGAGTCAGGTTGGAGGAGCAGTTGAGTGTTTTTGCCACAAGATGGCAGCACAATGCTACCAAACAGGTTTTGCAATCTAGGCCACTGCATGCAGCCAGTTCTGATACCTGCCTTCCACCACAAGCAATTTTCTGTTCCTTTGCTTGCTTGCTGTTTTGTTTTGCTTGAGACAGGGCATCAATATGTAGCCCTGGCTGTCCTGGATCTTACTCTATAGACTAGGTAGACTTCTTAGACTCACAGAGATCTGTCTGCCTCCTGAGTCCTGGGATCAGGGACACACACCACCATGCCAGAGGCTTGCTTGTTTTTAAATGAAGGGATTCACATAATGGCCTTGAACTCCACAGGTAACCAAGGTTAGCCTTGTCCTCCTAATTCTTCTTGTCTCTACCTCCTAAACCCTGGGGTATGGGCTGCTATGCCTGGCTTGGGGCGGGGGCTTACATGTAAACATGCACAGGGCTCCATGTACTGTAGGCCAAAAGCTGACGACAGGGTCTTTCTTGGTTCCTATTTATTGAGTGAGGGTCTCTAGACCCAGGACAACCTTATAGGATCAAACAGCAAGCATGCTGAACCATAGAGCTGATTTGCTAGCCTTTTTTGTTTTTTTCTTTCTTGTGGGAAGCGGTTTCGCTGTGCCTGTGTGGCTTAATTGGTAAACAAGCAATGTGCGCATGTGCGAGAATGTTTTCGTGCCAAGTCTTGGCCCATCCCGGGGCATGATGATGAGGCTCTGGGAGAGCAGCCAATCAGGTGTGGACACGCCACACTAAGGTGTATATAAGCAGCGCCTTTTTGGTGCTTGGGGTCTTCCTCTTCATGTTGAAACTGGTGTAATAAAGTTGCTGCAGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066647:ENSMUST00000209028:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGAAAGAGCCATGGACG
R:
CTTCCTCGAGCTCACTGCATC
Band lengths:
346-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types