HsaINT0187675 @ hg19
Intron Retention
Gene
ENSG00000196357 | ZNF565
Description
zinc finger protein 565 [Source:HGNC Symbol;Acc:26726]
Coordinates
chr19:36673187-36685230:-
Coord C1 exon
chr19:36685135-36685230
Coord A exon
chr19:36674636-36685134
Coord C2 exon
chr19:36673187-36674635
Length
10499 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATCTTTTTCTTATTTTTCAGACT
3' ss Score
10.83
Exon sequences
Seq C1 exon
GACTCTCCATTTCTAAGCCTGATGTCGTCTCCTTATTGGAGCAAGGGAAAGAGCCCTGGATGATTGCAAATGATGTGACAGGACCATGGTGCCCAG
Seq A exon
GTAAGCGAGGGCCGATTTCGACAGGGGAAGGTCCCTGGATGAGTCGACTGACAGGAGTAACTTGAGTTACTGTGGGAAGTTCCCTCAAAGCCCTACTGTGGAAGAAAGGCCTGAAACGTGAAGATGTGGCGAGTAAAGACTTTATTAGCGTCAGCTTCCAAGAGAACCTTGGCCTACTCCCATTAATTCCTCTCTGGTCTCTGTTCTCTCACATTTTCCTTTCTTTTTAAAAAGAGATGTACCTATTTCTTCCCCAGTGGCCAACTTTTTACCTGTACTTTGTATCCTTTTTCTTTAAGAGACAGGATCTCACTCTGTCACCCATGCTGGAGTGCAGTGGCGTGATCATAGCTCACTGCAGCCTCCATCTCTTGGGCTTAAGCGATCCTCCCACTTTGGGAGGCCAAAGTGAGATTACAGGTGTGAACCATGGTACCTAGCCAGATCCTTTTTTCTACAAGTGTCTTCATCCCTTAGAAAAACTTATTTTTGGCCGGGCGCAGTGGCTCTACGCCTGTAATCCCAGGACTTTGGAAGGCCAAGGCGGGCGGATCACGAGGTGAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCACATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTAGGCGCCTGTAGTTCCAGCTACTCGGGAGGCTGAGGCAGGAGTATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAGAAAAAAGAAAAACTTATTTTCTTGGCCAGGTATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGCAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCACCCTGGCCAACACGGTGAAGCCCCGTCTCTACTAAAAATACAAAAATTGGCCAGACGTGGTGGCTCACACCTGTAATCCCTGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGTGCGGTGGCAGACGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAACAAACAAACAAACAAACAAAAAACTTAGCTGAGCATGGTTGTGGGTGCCTGTAATTCCAGCCACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCATGAGGTGGAGATTGCAGTAAACCGAGATCATGCCATTGCACTCCAGCCTGAGCGACAAAAGTGAACGTCTATCTCAAAAAACAAACCAAAAAAAAAACCATTTTATTGGCTGGGCACAGTGGCCCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGAAGATCACTTGAAGCCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACCCCATCTCTACTAAAACCTCCGCCTCCCAGATTCAAGTAATTCTCCTGTCTCAGCCTCCTGAGTAGCTAGGATTACAGGTGCACGCTACCACACCTGGATAATTTTTGTATTTTCAGTAGATACAGGGTTTCACTATGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGACCTGCCCACCTCAACCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCAGCTGATCCTCTTAATGAGTATTTTTTTGTAGATTGTCTCTCACTTTACGTTTGTCTAATGTTTTCTCACAGTGAGATTCTGCATTTTAGCAAGAATATCACAGAAGTGATGTTATGTTCTTCTCTGTATATCACATATCAGACATCAACATGGCTTATTACTGGTGCTGTTCAGTTTGATCACTTGGTAAGATAGGTGCTGTTCACACTTTGGGAGGCCAAGGCGGGCGAATCACAAGGTCAGCAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTGAAAATATAAAAATTAGCTGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGGGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAAAAAAAAAAAAAAAAGATAGGTGCTGTTCAGTTTGATCACTTGGTAAGATAGGGCCTGTCTTGTTTCTCCCCTGTGAAGTTTCCATCCGTAATTGATAAATATCTTATGGCGAAATACTTTCACACTAGGCAAATGTGCTGCTTTTCCTCCTCCCACTCCGATTTTGGCATCCATCACTGGACCTTGTCTGCACCAGTTATTACTCTGTCACTTGTCTAATGTTGATTTTCTGTGTCCCTTATTCCTTCACCATTTATTAATTGGAATTCTTCAATAAGGAAGAACTGTCCCTAGCCCTCTTCCATTCACTTGTTCATTCAATGATTTCTTTATATCACGATGAGTTCGTGGGTATTTATTTTATTCTATGGGCTGTAGTCACTACTTTCATTGTTTATTTCATTGCTCGAATCGTTCAGGCTTTGGCCCTTGAAAACTCGTTAAGCTTGGCTCCTGGGTTCTCTCAACACACCCACATTCTCTTTTATATACTTCCACATTTTCTGGTACCACAGCATGTTCCATGGTTATTTCAGATTTTTCCTGCCTCAGCCCTGAAATCAGCCAGTTCTCAAAAGAATGCTGGTTCCTTTTATTGAAAAATGGTTCAGGAGGCAGAGGTAGCTGAGAGCCGAGATTGCCCCACTGCACTCCAGCCTGGGCAACAGGAGTGAGACTCCATCTCGGGAAAAAAAAAAAAAAAAAAGAAAGAAAAATGGTAGGAAATCGATCATATCTTTGAACTTTTTCTGAGCAAAGCAAGACCTTAACATCTTTACCATACCATCTTTTACTTCCCTGTGCCCTAGACCAGGGGTCGGCAAACTGCAATCTGTGGGTCAAATGCAGTCCATAACCAGTTTTTCATACAGCCCTAGAGCCAAGAACAGTTTTGATATTTTGAAAGTGTTAAAAAAAAAAAAAGAATATGCTGTAGAGACTTTATGTGTTCAACAAACCCTAAAACATTTACCATTGGGCCCTTCACAGAAAAAGTTTGTTTTTATGTGTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCATTGCAACCTCAGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCTTCCCAAGTAGTTGGGAATACAGGAGTGCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACCTAGGCCTCCCAAAACTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTTCCCACTTTCACTTCCAAGGACCCTTGTGAATACATTGTGTCCACCCAGATAAACTGGGATAATCTCGCCATCTTGTGGTGGTCAACTGATTAGCCTTTTTTTTTTTTTAATTTTTTTTTTTTGAGATGGAGTTTCGCCCTTGTTGTCCAGACTGGAGTGCAATGGCGAGATCTCCGCTCATCGCAACTTCCGCCTCCCTGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCACCACGCCCGGCTAATTTTGTATTTTTAGTAGAGGCGGGGTTTCTCCATGTTGGTCAGACTGGTCTCAAACTCCCGACCTCAGGTGATCCACCCTCCTCGGCCTCACAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCTGCCCTGATTAGCAATCTGAATTCCAACTCCCCTTGCTGTGTGACAACATTCATAGGTTCCAGGAATAAAGACACAGACATCTTTGAGTGCCGTTATCCCACCTACCACATTCTGTATGTATTTTTTTTAGCAAAGTTAATTGAATATGCATAAATTAACAATGTATGGACGGGCGCGGTGGCACACACCTGTAATCCCAGCACTTTGGGAGACCAGTAGGTGGATCACTTGAGGTCAGGAGTTCGAAACCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCATGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAAGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAAGGAACCAAGATCGATCGCGCATCTTTATTCCAGCCTTGGCAACAGAACAAGACTCCATCTCAAAAACAAAACAAAACAAAATAAAACAAAAACAACTTTATGGGTACGACTCTACTGTAATTCCGTATTAAAATATTAAGCCTATTGCTGTTGATTCCATAAAAGTGTTCTTGTCTTTCACAGAATATTTGGTTGGTGTGTTTTCTAATTTCTTGCAGTTCTGAAAAATAATAATCTTTTATTTATTAGATTTTTAAAAATTGTGATAAAATATACATTACATAAGGGGCCGGGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGATCAGGAGTTCCAGGCCAGCCTGGCCAACATGGTGAAACCCCATCTCTATGAAAAGTACAAAAAAAAAAAATTAGCCGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAAAATTGTTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCACACCACTGCGCTCCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAATTACATAATATTTATTTATTTATTTTTGTGAGACAGGTTCTGGCTCTGTTGCCCAGGCTGGAGTGTAGTAGCACGATCTCGGCTCACTGCAACCTCTGCCTCCCAGTTTCAAGCCATCCTCCCACCTCAGGTTCCCAAGTGGCTGGTGCTACAGGCACATGCCACCATGCCTGGCTAAGTAGATAATTCAGTGGCATTTAGTTCATTCACAGCATTATACACTCTGCTTCCAGAGCTTATGCATCATCCCAAACAGAAACTCTGTACCCATTAAACAATAACTCTATTTTCCTTCCTCCAGTCCCTGGTCACCTCTGTTCTACTTTTTGTCTGTATGAATTTGCCTATTCTAGGTATCTCATGTAAATCATCCAGTATGTGGCCTTTTGTATCTGGCTTATTTCACTAAGGATAATGTTTTATCCAAGTTGTAGAATGTCTCTGAATTTTATTCTTTTTATGGCTGAATAATATTCCATTGTATGTGTGTATGTAGATGTATACATGTATAAATACTAATATACATGTGTACATATTATATACACACTTTGTTTATTCACTCATCTGTTTTTTGTTGTTGTTGTTGTTTTGTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAATGTAGTGGCATGATCTCAGCTCACTGCAACCTCCACCTCCCAGATGCAAGAGATTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGACTACAGGCACCCGCCACCATGCCTGGCTGATTTTAGCATTTTTAGTAGAGACGGGGTTTCGCCACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAACTGACCTGCACGCCTCAGCCTCCCAAAGTGCTGGGGTTACAGGCATGACCTACCACATGCGGCCCCCTCATCTGTTCTTGGAGTTGTTTGTTTTTTGTTTTTAATTTTTTTTTCTCTCTCTCTTTTATTTTTCCTTGAAGCCCTTGAGTCTCACTTTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACAACACCATGCCAGGCTAATTTTTTGTATTTTTAGTAGAGACGGGTTTCACCGTGTTAGCCAGGCTGGGCTCGAACTCCTGACCTCATGATCCATCTGTCTTGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTACGCCTGGCCCCTAAATTTATATTCTTTATAAATTTTTATCATCTTGGCCTATTTCTGAGAAAGGTGAATTGAAATCTCCAAGATGACGATTTTGTTAATTTCTTCTTGTGTGTCTTTTGAATTTTGCATTATATGTTTGGAGGCTGGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCATGAGGTCAGGAGATCAAGAAAATCCTGGCTAACACAGTGAAACCCCTTCTCTACTAAAAGATACAAAAAATCAGCCAGGCGTGGTGGCACACGGCTGTAGCCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGCCAGAGGTTGCAGTGAGCCAAGATTATGCCACTGCACTCCAGCCTAGGCGACAGAGCAAGACTCTGTCTCGGCCGGGCACCATGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGAGCACAAGGTCAGGAGATCGAGACCATCCTGGTCAGTGAAACCCCATCTCTACCAAAAATACAAAAAATTAGCCAGGCGTGGTGACGGGCGCCTGTGGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCAGAGCTTGCAATGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAGAGACTCTGTCTCAAAAAATAAATAAAAATAAATATATATATTAGGAGGCTATTAGGTGTATATAACTTTAGAAACATAAATCTTCCTGCTGAATGGAATTACTTTCTTGATTATAGAGCTACCCTGCTTAACCCAAAATGATGATTTCTGTTTTTAAAGTCTATTTTTTTTTTTTTGAGATGGAGTTTCGCTCCTGTTTCCCAGGCCGGAGTGTAATAGCACGATATTGGCTCACCGCAACCTCCGCCCCCTGGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCATGTGCCACCATGCCCAGATAATTTTGTATTTTTAATAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGATCTCAAACTCCCAACCTCAGGTGATCCACCCATCTCAGCCTCCCAAAGTGCTGGGGTTGCAGGCATGAGTCACCGCACCCGGCCACACCTTTTATTTTCAAACACCTTAGGTCTTCATGTCTTAAAGTGTGTTACTTGTTACTACTGTGCACCTAGATTTTGGTATTTTATCCAATCTGACAAATGCCGTCTTGTCTTTTTTTTTTAAACAAGTTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACTATTCTCGGCTCACTGAACCTCTGTCCCTGGGCTCAAGCCATCCTCCCACCTCAGCCTTCTGAATACCTGGAAACACAGGTGCCTGCCACCATGCCCAGCTAATTTTTTGTGTTTTTGGTAGAGATGGGGTTGCACCATGTTGCCCAGTCTGGTTTCGAACTCCTGAGCTCAAGTGACCCACCTGCCTCAGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCTGGGTTGGTTTCAATGGTTAGTGAAAAAGGCAGTATTTCCATCTTTGGGGAAGATTCAGGAACAAGAAAACAAACAGAACAGCAGATGAATATGTAAATGAAAATCTAATTACAACAAAAGTGTTACAGAGTACAAGAAATGGGAGAAAGGATAAAGGCGTGTGTTTAGGGCTGTCAGGCTGAGAGCTTTCTTGAAAGTGTGAGTTTTTGCCGGGCATGGTGGCTGACGCCTGTAATCCCAATACTTTTAGAAGCCAAGGCGGCTGGATCACGTGACGTCAGGAGTTCAGGAGACCAGCCTAGCTAACATGGTGAAACCTTGTCTCTAATAAAAATACAAAAATTGGCCGGGCGTGGCAGCACATGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCCAGAGGCAGAGGTTGTGGTGAGCTGAGATCGCACCACTGTACTCCAGCCTGGGAGACAGAGCAAGACCCCATGTCAAATATTAAAAAAAAAAGACAAGCCAGGCACAGTGGCAAACGCCCGTAATCCCAGCACTTTGAGAGGCCGAGGTGGGCGGATTACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAAAGCAAAAATTACCCAGGCATGGTGGCAGGCACCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCGCCTGGGGGACAGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAATAGAGAGTGAGTTTTCATCTGAGACCTTAAGGATGAGAAAAGCAGCAAAAAGCCCAGGACAGGATTCTTGATAGATGGAAGAACCTGATGAGAGATCTGAGATGGAAAAGGCCTAGATTTATTTTACATGCTCATAGATGGCTGGTGGTTTTGTACACTGGGAGGAAAGGGGAGAATGTTCAATGTGAAGAGGCCCTGCTCTTGCTGAGACACAGTGGTGACAAAAACAAGCAGGGATCTGCTTTGCCAAGAGCCCTGTGAGCCATGGCAGTGAGTTTGTAATTCTTTTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACCACAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCAGGTAGTTAGGATTACAGGCATGTGCCACCACGGCCGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTTCATGTTGGTCAGGCTGATCTCGAACACCCGACCTCAGGTGATCCACCCACCTCAGTCTCCCAAAGTGCTGTGATTACAGACATGAGCCACTGCACCCAGCCCTTTTTTTTTTTTCTGAGATGGACTCTCACTCTGTCTTCCAGGCTGGAGTGCAGTAGTGCCATCTTGGCTCACTGCAACCTCTGCCTCCTAGGTTCAAGTGATTCTTGTGTCTCGGTCTCCCAAGCAGCTGGGATTATAGGCGCCTGCCACCATGCCTGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGCGATCCATTTGCCTTGGACTCCCAAAGTGCTGGGATTAAGGCATAAGCCACCTCGCCTGGCCTTTGGAATTAATTCTTAATGCACCGAAATGGGAAGGCAGTGAAATGTTTAAGCAGAGATTTTCATTTTGATGGACATCAACTTTATGTGGTGGGAAGTGTTGAAAATATAGATGCCTTATTTACATGAAATGTCCAGAATAGGCAAATTTATAGAGACAGAATTAGTAGCTCTGTGCCAGTAATGGTTGCCAGGGGCTGGAGGGAATAGGGAATGGGGAGTGACTGCTTAATGGGTGGGGGGGTTTCTATTTGGAGTGATAAAAATGTTCTCAGCCAGGCGAGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAGGGCGGGTGGATTGTTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCCATCTTTACTAAAAATACAAAAATTAGCTGGGTGTGGTAGCAGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAAGAGGCGGAGGTTGCGTGAGCCAAGATTGTACCACTGCATTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAGCAAAAAACAAATTTAGAACCCCTGGCTTAATTTGTCTTCTTGCTCCCTTCTGGCACCATGTGAGCTCTTCACATGGTGTGCTTTCATCTGCTTTTTTGAAATTGCATAATATTTGAGATGTATATAAGGCATTCACTTTTTATGGTTATTTATTTTTGTCTCCCTGTTCTACTATAGTTTTTTTTTTTTTTTTTTTTTTTTATGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCGACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAACCTCCCTAGTAGCTGGGATTACAGGTGCCTGCCACCAAGTGTGGCTAATTTTTGTATTTTTAATAGAGACAGGGTTTCACCATCTTGGCCAGGTGAACTCCCGACCTTGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCGTGCCTGGCCTCTACTATAGAATTTTTTATTTCTCATAGAGAAGGATCACAGCTTGTATTTATCTTTTTCTTATTTTTCAG
Seq C2 exon
ACTTGGAGTCCAGGTGTGAGAAATTTCTACAAAAAGACATTTTTGAAATCGGGGCATTCAACTGGGAGATAATGGAAAGCCTTAAATGCAGTGACCTGGAGGGCTCCGATTTTAGAGCTGACTGGGAATGCGAAGGCCAGTTTGAGAGACAAGTCAATGAAGAGTGCTATTTTAAGCAAGTGAACGTCACCTATGGACATATGCCCGTGTTCCAGCATCACACGTCTCACACTGTACGTCAGAGCAGGGAGACTGGTGAGAAACTGATGGAATGTCATGAATGTGGGAAAGCATTTAGCCGTGGCTCACACCTTATTCAACATCAGAAAATTCACACTGGTGAAAAACCCTTTGGATGTAAGGAATGTGGGAAGGCCTTCAGCCGTGCCTCACACCTTGTTCAGCATCAGAGAATTCACACGGGTGAGAAACCTTATGACTGTAAGGACTGTGGGAAGGCCTTTGGTCGTACATCAGAACTTATTCTACATCAGAGACTTCATACTGGTGTCAAACCTTATGAATGTAAAGAATGTGGGAAGACCTTTAGGCAGCATTCACAGCTGATTCTGCATCAAAGAACTCACACAGGCGAGAAACCCTACGTATGTAAAGACTGTGGCAAGGCTTTCATTCGTGGCTCCCAACTCACTGTGCATCGGAGAATCCACACAGGGGCCAGACCCTATGAGTGTAAAGAATGCGGGAAAGCCTTTAGACAGCACTCACAGCTGACTGTACACCAGCGAATCCACACTGGTGAGAAACCCTACGAGTGTAAGGAATGCGGAAAGGGCTTTATTCACAGCTCAGAAGTTACTCGACATCAAAGAATTCATTCTGGGGAGAAACCCTATGAGTGTAAGGAATGTGGGAAGGCCTTCAGACAGCACGCACAGCTCACACGACATCAGAGAGTCCATACTGGCGACAGACCCTATGAATGTAAGGACTGCGGGAAGGCATTTAGTCGTAGCTCATACCTCATTCAACATCAAAGAATTCATACAGGTGACAAACCCTACGAATGTAAGGAATGTGGGAAGGCCTTTATTCGTGTTTCACAACTGACTCATCATCAGCGAATTCACACTTGTGAGAAACCCTATGAATGCAGGGAGTGTGGAATGGCCTTTATTCGTAGTTCACAACTTACCGAACATCAGAGAATTCATCCTGGTATCAAACCTTACGAATGTAGAGAGTGTGGGCAGGCATTTATTCTTGGCTCACAACTCATTGAACACTACAGAATTCATACTGGTTAGAAAGCCTTGAGTGTAAGGGATAAAGATAAGCCTTTATGTGGAGTTCACATCTGGCTCAGTACTAGGTAATTTTTAATGTAGTGTAATTAATGTCAGAAAACACCTGTCACTTCCATCATAGAACATCAGAAAACTCACACCCAAAGAAAATTAAATAAATGTGGGAATTCTTTTTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196357-ZNF565:NM_152477:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF0403211=Rpr2=WD(100=13.5),PF097235=Zn-ribbon_8=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF097235=Zn-ribbon_8=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF097235=Zn-ribbon_8=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)