BtaINT0165857 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031071 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:HGNC:29254]
Coordinates
chr19:33698361-33700408:+
Coord C1 exon
chr19:33698361-33698428
Coord A exon
chr19:33698429-33700358
Coord C2 exon
chr19:33700359-33700408
Length
1930 bp
Sequences
Splice sites
5' ss Seq
GTAGTGAGA
5' ss Score
-0.06
3' ss Seq
CTAAAAAACATTTATCACAGGAT
3' ss Score
3.08
Exon sequences
Seq C1 exon
CAGGGCTTGCAATTTCCAAACCAGACATGATATCTCATTTGGAGAATGGAAAAGGACCATGGGTGGTA
Seq A exon
GTGAGAGAAATTTCAAGAACCCCCTTTTCGGGTGAGTTAATAAGAAACTGGAGGATGAGATTTATTTAAAGTCAGTAGATCTTGGATGGAGCAGAATATTTGAAATATCTGGGGGGTATCTTTGTTCAAAGCTGTCTCAGAGGAAAATATTCTCCCCATCTCATCCTCTCTCCTTACGCCTCCCTCCTGCCTTTTCTTCCTCTCTCCCTTTTTCTCTCCTTTTCCTTCTCCCTCATCTCTGCCCTGTACTTGTAGTCCCCATCCCATCCTATTTTATTTTCTTGGGAGCATGATTTTCATAATTGTTCTTTCATTTCTTCTTCATTCTTTCAATTCTCTCCTCTCCAGTTAACTTTATATTTTTCTCATTTGTTTAACTGCTGTGTATCTGATATCTCTTCTTTCATTTTCCTGAAAGTGCTTTCTTAAGGATCATCACTGATTTCTTTTAAGCTAAACCTGTTGACTGATTATTTAACTTTGTTCACTTACAAGCCTGCTGAACCCCCCTCCACTCTTCCAAGATCTTAACTTATTGAGAATATGAATAAATCATTTGAGAATCAAAATACAGTATTTATCTATTTAACCAATATTTACCTTTTTAACTAAGATTATTTTTCTTCTACTTAAAGAACACTGTTCAATACTCTCTTTTATTCAGATATGCTGGTGTCATATTCTCTCCATTTTTCTTTTTCCCTAAAAAAAATCCTGTCACCTTAATTCATTTAGATATTTAAATCATCTAGGTTTTAGTCCTTGGGTTCTAGAGTGGTCTTTTTTGGTGACCCTGAGTTCAGACCTGTGTCTCATCCTGTGAATTCATTGAAACTTCTACTTGAGTTTTAAAATCCTCAAACCATTTCTTTTTTCATAAAACCATTTTACTAACCACAGATTTTGATTCCATTTTTTTTAAATTTAGATGTGATTACTTGGAAATAAAAATTTTCAAGAAGTTTGAAAGTGTTTTAAAAAGTAAAATATTAAGTTTGCTTATACAAATAAATTATAAGACCACAACCACCCAGTATAATTGTTTAAGAAAATTTTGAAACTGTCAGAAATTTTCTTAAGACCCATAAAAAGGTTGCAGAACTACTCTTGATAAAAGTAATTGTCGTTATTTGTAATATTCACAACTATATTAATTTTGACTAGTTCAGCCTACTTTCTGAAAAATCAGTGTCTTCCATAAATGTTCTGTAAAAAGATACAGAAAAGAATATTTTTTAAAAAATAACATATTAATGTATAACTGAATCACTTTGCTGCACAACAGTAATTAATACAACATTGTATAATAAATAAACTGTACTTAAATAGTTAAATACAATTTTTAAAATCTAAATTGAGAGCAAAAAAAAAAAAAAAAAAAGATACATATGAAGACTTGAAGCTATTCTGACAAGGAAATGTCAGAGAAAGCCCTCTCAGAAAAGCTAGTGAACAAATAATGAGAACAAGTGGGAAGTGTTGTTGGGGGTGAATGTCTGGTTTGTGGAGTAAATGGGAATCAAGGAAGTAGTTACAGCTTTTGAAGAACCTCTCTAAAGAATTTGACTCTAAAAGGAATGGGAAAAGGAAGAAATATTTGAGAAACTTGGATTGTAGAAGGGTTACTGGGAATAAATTTTTTTTAATAGGAAGAAAACTCCTTGAATTACTGCTATGGTTCTTTGCTCAATCAGCCACCCTTAACCCTACCCCCTTCTTCCTAGAAAATAAGGCCAATCTGCAAGCAGTTAAAAACATATGTTCATTATCAATTCAAGCTTCCCTTTTGTTATCCTGTTAGTACAATCTCCTCAACCTAGGAAATAGGAGTCATTTGAGTTTTCTTTTTTTCCTCCCAGAGTTGGAGACCAAACCTACAACCAAGAATACGATACCAACAGAGGATTTTTCTAAAAAACATTTATCACAG
Seq C2 exon
GATGCCATTGTAGAGAAACTCACAGAGAATGGTCTATGGGACCCCATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031071:ENSBTAT00000052640:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]