BtaINT0165872 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13175246-13178939:-
Coord C1 exon
chr11:13178805-13178939
Coord A exon
chr11:13175372-13178804
Coord C2 exon
chr11:13175246-13175371
Length
3433 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATTTTTTTGTCTTCTCCAAGGCA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTAAATATAGATAAAATTTACGATCGATTTGTACATCTTGATAACTTACCGGAAGATGGACTTCAGTGTGTACTTTGTGTCGGACTTCAGTTTGGGAAAGTGGATCACCATGTATACATGAGTAATAAAAACAAG
Seq A exon
GTAACAAGGTCCCTTCTATTTTAGCTTGTATATATATATCTTTTAGAGAATATGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGACTCTTGTGACCCCATGAACTTGCAGCACTCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTTACCCAAACTGATGTCCATCATGTCGGTGATGTCATCCAGGCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAACATCAGGGTCTTTTAAAATGAGTCAGCTCTTTGCATCAGGTGACCAAAGTATTAGAGTTTCAGCTTCAACATCAGTCCTTCCAATGAACACCCCGGACTGATCTTTAGGATGGACTAGTTGGATCTCTTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAATACCACAGTTCAAAAGCATCAATTCTTCGGCACTCAGCTTTCTTTATAGTCCAACTCTCACATCCATACATAACCACAGGAAAAACCGTAGCCTTGATTAGATGGACCTTTGTTGACAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATGACTTCCAAGGAGTAAGCGTCTTAATTTCATGGCTGCATTCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAAAGTCTGACACTGTTTCCACTGTTTGCCCATCTTTTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCATTCTCCCCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTACTATAAGGATGGTATCATCTGCATATCTGAGGTTATTGATATTTCTCCTTGCAATCTTGATTCCAGCTTGTGCTTCCTCCAGCCCAGTGTTTCTCATGATGTAGAATATGTAGCTGAACTCTGTGTTCAGTACAGTTTGCAACTGTTAATTCAACTTCTGAACTGTAAACATTATTCAGTCTCTGAGCAGAATTATAATATACCGTTTTATTTTCTACTGGGCTGTAATAAGAAGGAAGAACTCCTAGTTTTAAGGGGAAATAGAGACTTGCACAAGGTAGAAAGGTAATGTGTGCAAAGACCATTATCTTATGGGGAAGTTTAGACTTGAGTTCATCTAGCCTTAAGTACCTTTGTGACCTTAGCTAAGTTGTTTACACTTTTAGTTCTTATTTGTAAAAGGAAAGAGTGTCAACCAGGTATTTTCTAAAGTCCTTTCCAGTGTTAAAACACACAGAGATAACTCTGTTAAGTTATATGTAAAGAAGTAGAAATAACCATTCCTTATTTTCATAATTTGGCTAAAGCCAAAAAGATAAATCCTTTTTACATTTGCTGTACCCTCTGTCTTTTCTTAATTCACACATGTGCCCATGAAAATTAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCATGGACTGTAGCCTACCAGGCTCCTCAGTCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCCCCAACCCAGGGATCGAACCCGGGTCTCCTGCACTGCAGGCAGAAGCTTTACCATCTGAGCCACCCGGGAATCCCGATCTACCAAGTAGTAGATAGTAATTCCTTTGACATGTTTAAGAAATTTCTTAAATCATGTTTGTCAAAGTAGTGCTAACCATATTTACATTATTGTTCAGCCATCACCACTCTCCATCTCCAGAGCTCCTTATAAACTGAGACTTCCTATCCATTAAACAGGAACTCCCCATTCCCTCTTTTCGTAGCTCCTGGCAACCACCACTCTACCATTCTCATTTTTGTCTCTCTGAATTTGACTATTGATATTTTAGGTACCTCATATAAGTGGAATTGTACAATATTTGTCCGTTTGTGTCTGGTTTATTTCACTTAGCATAATGTCTTCAGCATGCTTTGTAGCCTGTGTCAGAATTTCCTTCATTTTTGAGGCTGAGGCTGATAAAATATCCCATTATATGCATGAACCACATTTTATCTGTCTACTCATGTGTTGGTTGACACTTGGGGTTACTTTTGCCTTTTTTTTTTTTTTTTTGCTTTTGACTGTGTGAATAATACTGTATGAACATGCATGTACAAATACTTGCTCCAGTTCTGGCTTTCAATTCTTTTTAGGTATATATTAAAAAATGAAATTGCTAGATCTTATGGTAATTTTACTTTTAATTTTTTAAGAAACTTAATATTTTTTTGTCTTCTCCAAG
Seq C2 exon
GCAATTCTTCAGTTAGATAGCCCTGTATCTGCTCAGTCAATGTACAGCTTTCTGAAACAAAACCCACAGAACATAGGTGACCATGTATTGACCTGCACATTATCTCCAAAGATGGACTCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242:ENSBTAT00000012184:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.310
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PU(32.1=37.8)
A:
NA
C2:
PF138931=RRM_5=PD(64.2=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development