HsaINT0187947 @ hg19
Intron Retention
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71633258-71635377:+
Coord C1 exon
chr2:71633258-71633392
Coord A exon
chr2:71633393-71635251
Coord C2 exon
chr2:71635252-71635377
Length
1859 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTTTTTAATCTTCTCCAAAGGCA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GCAAACATAGATACAATTTATGATCGATTTGTACATCTTGATAATTTACCGGAAGATGGACTTCAGTGTGTACTTTGTGTTGGACTTCAGTTTGGAAAAGTGGATCACCATGTATTCATAAGTAATAGAAACAAG
Seq A exon
GTAACAAGTTCCCTCATAATTTAGCTATTCATTCTGTAAAGAATGTATAATAACCCTGTATTCTGACAATCTGCAACTTCTGATCTGAAGCACCTGTAAATATTACTCAACCACTTCGCAGAATTATTATAAACCAGAATATTTTATTTTGGACTGGGCCGAGAAAGAAGAGATGACCTCTCTTTTTTCAGAACTCCTAGTTTTTAAGGAAAAATAAGACTTACGCAAGGGGGAAAGGTAATATAGTGTAGACAGCATTATCTTACTGGGAAGTTTAGACCTGAGTTCCTTTGGCTCTGATTTTAACTATCTTTGTGGTCTTGGCTAAGTTGGTTTACACTTACTTGTAAAATGAAAGGGGTATTACCCAATATTTCTTTAAGTCCCTTCCAGCTATGAAACACCTGAGTTAGGTCTATTTGTTTGTTTATATGGAAAGAGAGAGATAAAATAATTGCTGGATGCAGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGAGGGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGTGGGATGTCGTCTCTACAAAAAGTTTAAAAATTAGCTGGGCATGGTGACGTGTGCCTCTGGTCCCAGCTGCCTGGGAGGCTGAGGCAGGAGGATGGTTTGAGCCCAGGAGTTGGAGGCTGTAGTGAGCTGTGTTCACGCCACCACACTCCAGCCTGGGTAACATAGCGAGACCCTGTCTCAAAAATAAAGTAATCATTCCTTACTTTCATGATTTGGCCTCTTAACCAAAAATTATTCATTTATTTACATTTGGTATGCCTTCTGTATTTAATATGTATTTCAGCTACATGTTCATTAAAATTAAATTTTTATCAGCCATATATTACCTAGAAAGGCAGGGTTTTACATAAAAGTGGACAATATTCATAAAAAGCACTTAATTAACCAACAACTAGATAATTTCTTTGATATGCTTCTGATAAATAGAGCATAGAATGGAATATGATAAATAGTGTGACATAGAATGGAAGGTGGGGCACAGATGGCACATAGGAATTCTGAACCTTTCTTGTAAACATTTTTAATCCTCTATTTAAAAGAATACCTATCATTCTCTTCAGTTTTGCCTTGGCTTTACAACATTTTAAGGATTGTTTTCTCTTGTTTCCTTTAAATAAGGATTAACCTTACCTTTGTAGTCATATATCTGAAACCTGAAAGAAGAATATATTCCAAACTTTTAAAACAATTAAAAACATTTTTATTGTAGTAAAATACACAAATTTTACCGTTTGTAAGACATAAATTTAACATTTTAATCATGTTTAAGTGTTTGTTCACTGATATTCAGCACCTTCACATTGTGCAACCATCACCACCATCCATTTGTGAACTTTTGTCTCCTCAAACTGAAGTTTTCTATCCTTTTGACAATAACTCGCCATTAATTCAGCCCTTATCAACCATTATTTCTGTTTTTATAAATTTAGTTACCTCATGTATGTGGAATTATATTTGCTTTTTTGTGACTGGCTCATGTCACTTAGTATAATGTCTCTAAGGTTCATCCATGTTGCAGCATGTGTCAGATTTTTCTTCATTTTTAAAGCTGAGTAATAATTCTGTTTTACGCATGTAACACATTTTTATATCCACTCATCCATTGATGGACAGTTGGGTTGCTTCTCCCTTTGTCTGTTGTGAATAATGCTTCTGTGAACATGGGTGTACAAATACATGTTTAAGTATCGGCTTTCATTCCTTTTAGGTGTATACTAAAAAGTGGAATTGTTGGATTATGTGGTTATTCTAATTCCAATTTTTTTAAAGAACTATTCATAACTTTTTAATCTTCTCCAAAG
Seq C2 exon
GCAATTCTTCAGTTAGATAGTCCTGAATCTGCTCAGTCAATGTATAGCTTTCTGAAACAAAATCCACAAAATATTGGTGACCATATGTTGACCTGCTCATTATCTCCAAAGATAGACTTACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-ZNF638:NM_001014972:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PU(32.1=37.8)
A:
NA
C2:
PF138931=RRM_5=PD(64.2=81.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACATCTTGATAATTTACCGGAAG
R:
CTCTGGTAAGTCTATCTTTGGAGAT
Band lengths:
232-2091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)