MmuINT0178513 @ mm9
Intron Retention
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83917287-83919233:+
Coord C1 exon
chr6:83917287-83917421
Coord A exon
chr6:83917422-83919110
Coord C2 exon
chr6:83919111-83919233
Length
1689 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
AAAAATATTTTTTTCTAAAGGTG
3' ss Score
6.94
Exon sequences
Seq C1 exon
GCAAATATTGATAAAATTTACAACCGATTTGTACATCTTGACAATTTACCTGAAGATGGACTTCAGTGTGTGCTTTGTGTTGGGCATCAGTTTGGAAAAGTGGATCGCTATATGTTCATGAGTAACAAAAACAAG
Seq A exon
GTATTTAAACCCTATATGCTTGCAATCTATAGCTTCTAACTTGGCATTTGAGTAGAAGCATCCATAAAGATTATTCAGCCATGAAAGCAGAAGTATAACAGAACAATTTCTTCTGGACTGTAATACCAAAAAAAAAAACCAAAATAGATAATCTATTTTTAGTTTTTAAGGAGAAGTAAGATTCACAGAATAACGGAGCATGTCTTACTAGGGGAGTTACACATTACTTACATTAGTTATATAAATATTGCAGAGATTTTTTTACCCTCATTAAATTAAGGGCACATTACATAGTTTTAGTTTTCAAAATCCTCTTTCTAAGTGTAAAACACTGATTTATTTTAAAAGGCAATGTTTTGTATTAAAACTCCTTTGTAATTTGGTAAGTGATTGCAAGTGATGTGATGGTATAGTGGTGACCATAGGTGCCTTATAAACCTATTAAGTAACACGCAGCTACTGATTTTCTTTGGTATGTTTTGAACTGATAAGTAGAGCCTGTCTGGTACTCTAGACAAGGTATGGCATTGCATGGGAAGGCAGGGCACAGGTGCCACATAAGCAGTCTGAACTTTTAAAACTTTGCACATTAGCCCTCTATGGGGTTTTGGTTGTTTGTATGGGTTTTGGGGTTGTGTTTTGTTTGTTTGTTTTGTTGCAGGTGTGTGTATGTGTGTTTTAATTTTTGTGGATTTGTGTGCATTGCTGTATGTATGTGTCTGTGTCTGTGTCTCTCTGTGTGTACCAGAGGAGGATAGAAAAGGGTATCAGATTCCCAGGAGCTGGGGTTACCAAAACTTGTGAGCCACTCAATTTGGGTACTAGGAACTGAACTCAGGTCTTCTGGGAAAGCAGTAATTCCCAAGCCATCTCTCTAGCACACATTAGTCCTCTGTTTTAAAGAAAGGGGATTTTGCCTAATAATTTTAATCTTTTTTGTTTGTTTGTTTTTGTTTTTGCTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACCCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGCATGTGCCACCACGCCCGGCTTTTTAATGTATTTTAAATTATGTATTTACAATTTTAGCCTTAGGTGTCAGTCCAGCTGCATTGAACATACTTGCATTGTGCAGCTATTGCCACCATATAATTGTATAACTTTTCCATTTTCTCAAACTGAGACTTCTTGTACTTAAACAATAACTGTTTAACATGCCTCCCATCCACCCAGACCATAATTGGCACCCTATGTCTGTTTCTATAAATAAGGATAACATTTGATGCCATAAAGAATTTTAATTGTATTTACTATTTTGTAATTGTTTGTTTCACTTGGCATATGTTCCAGGCTCATTGATGTAGCATATATCAGAACTTCTTTTTTAAGGTTAAACAGCATTCTATTGTGTGCTTAGTCTATGTTTTAAAAATCCATTCATCAGTTGGTAGATAGATCTCTTTTAACTGTTGTGCCTAATATTTCTGGAAATGTAAGTGAGTAAATAAATGTTTGGTTCCCTGCTTTCAGTTCTTCTGGGTGTACATTAAAAAGTGGAATTTGTTAGAAGACATCCTAATTCTACTTGTAATTTTTAAATTCATACTTTAAAAAAATATTTTTTTCTAAAG
Seq C2 exon
GTGATCCTTCAGTTAGAAAGTCCTGAATCTGCTCTGTCAATGTACAATTTTTTGAAACAAAATCCACAAAACATAGGTGAGCACGTGTTGACCTGCACTTTATCTCCAAAGACTGACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-Zfml:NM_001166371:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PU(32.1=37.8)
A:
NA
C2:
PF138931=RRM_5=PD(64.2=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGATTTGTACATCTTGACA
R:
CTCTGAGTCAGTCTTTGGAGATAA
Band lengths:
238-1927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: