RnoINT0168507 @ rn6
Intron Retention
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115662661-115664663:+
Coord C1 exon
chr4:115662661-115662795
Coord A exon
chr4:115662796-115664540
Coord C2 exon
chr4:115664541-115664663
Length
1745 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TAAATTCATACTTTCTAAAGGTG
3' ss Score
5.11
Exon sequences
Seq C1 exon
GCAAATATTGATGAAATTTACAACCGATTTGTACATCTTGACAATTTACCTGAAGACGGACTTCAGTGTGTGCTTTGTGTTGGACATCAGTTTGGGAAAGTGGATCGCTATGTGTTCATGAGTAACAGAAACAAG
Seq A exon
GTAATTATAGCCTGTATGCATGTTACAGTCTGCAGCTTCTAACTTGTCTTTTGAGTAGAAGCATCTGTAAACATTATTCAACCATTATAATACATTAGAACAGTTTTTTTGGACTGTAATTCAAAAAAAGAAAAGATCTCTCTTTAGTTTTTAAAGAGAAATAAGATTCACAGAGAGAGCGAAGGAGCATGTCTTACCAGAGGGCTACATACATTAGTTATATAACCATGCATGGCAAAGCTTTTTTACCCTCATAAAGTGAAGGGCATGTTACATCGGTTTTTTAAAAACCTCTTTCTAACTGTAAAACACTGATTTTGATCTACTTGTCAATTTTATTTCATGATTTGACTTCTGTACTTAAAATTTCAAACTAAAATTGTTGATTTTTTATATTTAATCTGCTTTCTATATTTATTATGTATTGCAGCTATATATCTATTATAATTAGTTTTCTTTTATGGGGTCAGTGTTCTCTTGTGTAGCCCATGCTAATATTTAACTTTCTACAGTATTGTTTCTTCCTCCTGAATCTCTGGGCTAGCGGGTGATATTCCTATCTAAAAAAATTTTTTTTTGTCAGTACTATATTATTTTAAAAGGCAATACTTTGTATCAAAACTACTTTGTAATAACAAAATAATAATAATTATAAGTATGTTGCAAATGATGCAATGGTATGGTAGTGACCAAATGTGCCTTATAAGCCGATTAAGTAACAGGCAGCTACTGATTTTCTTTGATAAATAGAGCCTGTCTGGTACTCTAGATAAGGCATGGCATAGGATGGAAAGACAGCACACAGGTGCCACATAAGCAATCTGAACTCTAAAACTTTGCACATTAGTCCTGCATGGGGTTTTGGTTGTTTGTATGGCCTTGGGGTTTTGTTTGTTTGTTTGCTTGTTTGTTTTGTTGGTTGAGGGGTTGGTGTGTATATGTTCTAATTTTTATGGATTTGTGTGTATTGCCATGTGTGCCTGTGTCTTTGTGTGTATGAGGATAGAAAAGGGTGTCAGATTCCCTGGAGCTGGGGTTACCAAAAGTTATGAGCCACTCAATGTGGGTACTGGGAACTAAACTCAGGTCTTCTGGGAGAGCACTAACTCCTGAGCCCTCTTTCCAGCCCCAGACACTAGTCTTCTGTTTGAAAGAAAGGAGTTTTAATATCCCTTTGTTTTGCTTAGTATTTTTAATGCATTTGTAAATTATGTATTTACCATTTAAACTTTAGTTGTCAGTTCAGCTGCATTGGACATACTTTGTGCAACTATCGCACCACCATACAATTCTATAACTTTTCCTGTCTTCTCAAACTCTCACTTCTTGTGCATTAAACAGTAACTCTTTAACATCCAGACCATTCAACTGGCACCTTGTGTCTGTTTCTAAAAATAAAAATAACATCTGATGCCATAAGGAATTTTAATTGTATTTCCTGTTTTGCAGTTGTTTACTTTACTTGGTGTGTATTCCAGACTCATTGACCTGGCATATATCAGTTTCTTTTTTAAGACTAAACAGCATTCTGTATTTTTAAAAATATAGTCTATATTTTTAAAATTTATTCATCAGTTGGTAGACATCTTTTTTAACTATTGTGCCTAATATTTCTTGAAATGTAAGTGAGTAAATAAATGTTTTGGGTCCCTGGTTTCAGTTCTTCTGGGTGTATATTAAAAAGTGTAATTTGTTAGATGACATCCTAATTCTACTTGTAATTTTTAAATTCATACTTTCTAAAG
Seq C2 exon
GTGATTCTTCAATTAGAAAGTCCTGAATCTGCTCTGTCAATGTACAATTTTCTGAAACAAAATCCACAGAACATAGGTGACCATGTGTTGAGCTGCACGTTATCTCCAAAGATGGACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501:ENSRNOT00000019617:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF138931=RRM_5=PU(32.1=37.8)
A:
NA
C2:
PF138931=RRM_5=PD(64.2=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGATTTGTACATCTTGACA
R:
CCATCTTTGGAGATAACGTGCA
Band lengths:
230-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]