BtaINT0166085 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84851629-84856642:-
Coord C1 exon
chr8:84856547-84856642
Coord A exon
chr8:84852241-84856546
Coord C2 exon
chr8:84851629-84852240
Length
4306 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTAATTTTCTCATTTTTAGAAG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GGTACTGCTTTACAAAGCCAGAACTGATCTTCATGTTGGAACAAGGAGAAGATCCATGGTTATTAGAGAAAGAATTTATAAACAGAAGTTCCCCAG
Seq A exon
GTGAGTTACTGAATACTGGCAGAAGGCATCCAAGAAAATTAGATCCGAAGTGATCACCTAGATAGAAGTCAGCAGTTTGAAATGTTTTTCAGCACTCTCCTATTAGAGGTCTTTACATTTGAAATTTTAGAAATAATAAATCTAATAAAATGTGAGAAGGGGACAACTAAAAGCAATGGAATGTAAGCATGTTGATATTCTCATCTTTAGAAGATGGGAGCTAAGTATACCCTTTGAAACTGAAAAATTAAGTAATGGATGCATATTTAACAGTAAAAAGGTAAAAACTAAGAAAAGTTAATAAACTGAAATTGGGAGTAACAGAGCAGAAGAGAGAAATAAATTAATTTTATCATTATATAATAAATTACTAGATACAATCAAAATTAATAGATGATTAAGAAATTGTATAGTTAGAAAGGATAAAGACTAGAGCAAAGTGCAACCCTCCTAATTGTTAAAAGTTATTTACATTTGACAGACTAAAGAAAACAGACCTATTAGTAGAGAAGTTTCTTATAAATACTATATCAGGGTCCTCAGGATCATCATCAGGTTTATTAATTCACCTGGAGGACTCAGCACACAGGCATACTCGTAACTAAGATTTATACTGTGAAATCATGCAGAGCAAAATCAGTAAAGAGAACAGATGTATGGGGCAAAGTCAGTAGAAAACCAGTTATGACAACTCGTGTGAAATATCTACCTGGAAAGTTCATTTGCAATGAAGAGTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGAGTGAACTCTGGAAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCGTGGGGTCGCGAAGAGTCGAACATGACTGAGCAACTGAACTGAACTGAACCCAGAGTTTTTACTGTAGGCACCCATATATCAAAATTCTAGGCTTTCTGATAGAAGCTAATTATTCAGCATAAATATATTTTTTGTACAAACAGTTTAAGCACATTGAGCCCCTCTTAGCAATTCTGGTAACCATCTTGAAATCTGAGTTCCCAGATGCTAGTTAAGGGCTCATCTTGTAAGCAGGCTTTTCTAAGGGTAACAGTCTAGGCCTGCTGTGTTAAAAATTTTCACCACAAAAGCTATGCAAACATACAACATAAAACAGAGGAAGACAAACATATCTGACATATCAACTCTCAATGTAAATGGATTAAATACACCTATTAAGAGAAAAGGCTATCATATTGTATCAAAGAAATTGTTCTTGCTTAGTCACTAAGTCATGTCTGACTCTTTCACGACCCCATGGACTGTAGCCCTCCAAGCTCCTCTGTCCATGGGATTTCCCACGCAAGAATACTGGAGTGGGGTGCCATTTCATTAGCCAAGGGATCTTCCCAACCTAGGGATCGAATCCACGTCTCCTGTTTGGCAGGCAGATTCTTTACCACTGAGCCACTAGGGAAGCCCATCAAATAGTACATCTACAAAATAGTTTAGGAAGTTTGAAAATGCAGTCATGGATTATTAAGCCAGTAAACATAAAAGCAACTCAGTGTTTATTTATTTCAAAGTTCAGTTCAGGTCAAAAACAGGTGGAAAAAGGACATTTTGATAATGCTAAAGAAGATAATTTTTAAAGGATACAGAAAAGTTCAAAATATTAGTACACCAAATAAATTGTCATCAAGATTCATAAAACAAAAAACTGCAAGAGTTATAAGGAGAAACAGGAACTCATTAGAAGTAGTCAACCTTAATATCCCTCTCTAATTTTGTTTCACACCCTGTGGACTCTAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGTATGTGTATGTGTATGTGTTAGTTGCTCAGTCATGTCTGACTCTTTGCAACCCCATAGACTGCAGCCCACCAGGCCCCTCCGTCTATGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAAAAGGAACTATAGAAAGAAAGAAACTAAAGTCACTCAGTCGTGTCTGACTTTTTGCGACCCCATAGACTGTAGCCTACCAGGCTCCTCCATCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGGATTGCCATTTCCTTCTCCAGGACTCTAGAAGAGTGCTTGGCAAACTGTGGCCCACATGCCAAATCCTGCCTACTGATTGTTTTGGCAAAGAAACATTTATTGGAACACAGCAATATCCATTTGTTTACATATTCAAGCTACAAGGCAGACTTGAATAGCTACAGTAGAGACTGAATAACCAGTAAAGCCTAAATCATTAACTCTATGGCCTTTCACAGAAAAAGTTTACCAACCTCTTATCTAGAAATATAAATAGCATATTTTATAAAGATGAATGTAGTATGTTCTGAAAACAAAGCTATGCAAACACGCTACATAACTAAATTTATAGAGGGATGCAAAGAATATCACAGTGAAGGTTTATTTTGGAAAAGTGAGCAAAGCTTCATAAAGCATAGCTATGGTGCTATAGATTAAAAGGTGAACTATTATTTTAGGTACAACCAAGAAAGAGAAAATGCTTCTCATTTATGGGTTTTCCTTCAATTTTAAGATGCGTCTTGATTTTGGTGATGGGTATTTACTGTAAAGTCACAGATATGGGTGCTTTTATCCCTTTATAAAGTGAATGATATACAGGTAGTAGCTTCTTTCAGGTTTTAAAATAAATGTTGCTTAAATTTGTGAGAAGGATGTTACAAACTTTGTTTTTTGTTGTTAAGATTTGGGAAAATAGTGTGCCCTACCTGAAGGGCACTTACGTTCTCAAGGGTTCTAAGGCTAGAATGGAGGATAATTTAGGGAAAGAATGTGAGTATGAAGTTATTGTTGGAAATGAACCACTTAATGAGGACTGATACGCTATCAAAAATTAGAGCAGAAAATAATGTGTACTAGACAGGAAACCTGGGTTCCATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGAAATGGCAACCCACTCGAGTATTCTTGCCTGGGAAATTCCATGGACAGAGGAGCCTGGTGGACTATAGTCCATGGGCTTGCAAAAAATCAAACACAACTGAATATGCATGCATGCTCATGCTAAGAGGATTGGTAGCAAGAACACATAATGAGCATATAGTTAGTGTAAAACTTTCTTTTTCTGAATTACATCACTTTAATCTTTCATCTGTTGGTACCTAAGGTAGTATAACCAAAGCCTTCAAATATTTTTAGCATGGGCATGACATTTTTGCATGGAGTGTGGGAAACAAGAGGACAATAGCAGTCAAATGTTCATAGGAAATTTGTGGTAAATAAATATAAAAAAGGATACTTAAAAGATTTTTAGGGCCAACTTGAAACACAATCCTTAAGATCTTGCAGTGAATAAAAACTAGATATGTGGAAAAATAGATGGAAATTAAGGATTGGACAGGAGCAAGACTAGTCTGGAGGACATAAGTGAACAAATTAAAAAAAAGGAAAGTAAAGATTTGATGATTAAGAGGGATTCACTACTGAACAACCCTGATATAATACCAAGGCACTAGAACCAGGAAAGAGGGGTAACTCCAACACAGGCAGAAAAATTACTTTAACTCTCATCAGGTTTCTCACTTCCACCTATACACTTATGTTTCTGATTCTTTCTTTCAACGTAAGAAAGTTGGTGCCATGATTTTTGTTTGTTTGTTTGCCATACATGTAGCTTGCAGAATCTTAGTTCCCAGACCAGGGTGGAGCTCCAGTTGGAAACATACAGACTAGTGGTTTTCTTATCATTGTACTCTATGTTTCACTGTGAATATAGTCACTGGTGTGCTTCCCTAAGGCAAACTCTATCTCAGTAAAGCCACTAAAAGCAATTCTCCATTGATACATTTTGTTATCTACTTAGAGCAAAATCCTTGTCGAATTCATTCCAGTCTTTGTTTTCTCTGTTCCCAGGATTCAGCTCTCTTAAATATATTCTCTTTTCTTAATTGTTGCTTTCCTTTATATCCTCTTCTTTTTCCAGTTTTGAAAATTATGGTTTAAGTTACCAAAGATATGTGTAATTTCATTTCTAGATTGCTCTCTCTTTTTCCACTAGAAAAAGTTTTTAACAACAAAAGAAGAGAGAATACAAACTTGAAATTATTTTGGGGGAAGAAACTGAGCCAGACACCAAGGAGTCAAACACATAATGGGGCATAGGTATATAAATCTCATTTTATAAGTGTGTTAAGTATCATAAAATATTCTTAATTTTCTCATTTTTAG
Seq C2 exon
AAGAATTCCAACCTGATGAACTCTTAGAGGAGAGCCTAGAAAACCAAGGCAAACATTTGAGGCAAGTTTTATTCATCAACAAATCATTGACTATGGAACAAGAAATATCAGGAAAACCATGTACTCTGGACATAAACATTTTTCCTGCAGAAACAATACCCTGTAAATTTGACACTACAGGGTCTACTTACTTGCTTCTTAGCTCACTGGCCCCACACTGTCAATATTCAAAAAAGACTTATGCGCCTAATGTATGTGAGAATTGGCTTTTCAGTATTAAGGACGGCAGAACTAATACTGGAGAGAATTCTTTTGTTTGTAGTAAAAATGTGAAAACCTTTGGACATAAAGACAAAGTTATCCAGCATCAGACAATTCAGACTTTGCAGCAAGCTTTTGAATATAATGAATGTAGAAAAGATTTTCTTGAAAAGACTGCCCTTGTTATGTCTAAGAGTACCCATCCAAAAATGAAACCTTATGAATTCAATAAATTTGGGGAAAACCAACATGAGAAATCAACCTTGATAGTTTCTCAGAGCAGTCATCCAGAGGAGAAGAGTCACTATGAGTTTAATAAATATGAATGTACTAAAAACAGAAATAATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836:ENSBTAT00000011635:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]