MmuINT0179014 @ mm10
Intron Retention
Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165374264-165382783:-
Coord C1 exon
chr2:165382691-165382783
Coord A exon
chr2:165381887-165382690
Coord C2 exon
chr2:165374264-165381886
Length
804 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTTCTGTTCCTTCCTTCCAGAAG
3' ss Score
11.25
Exon sequences
Seq C1 exon
GGCTTCATGTGAGCAAACCAGATGTGATCTTAAAACTGGAGCAAGGAAAAGAGCCCTGGGTAGTGGAAAACTTGTCACGACAGAACCACGCAG
Seq A exon
GTAAGTGTGATGACCAAGTGGGTAAAACTGAAGAACTCGAGTCCAGGCTGGTCCATGACCACAGCAGGCACCTATATGATCTTCTTCTGGAATCTTCTAGGACCTAGAGCTCTAGAAGTGATGGATGGGGAAACCAGCTCTCATAGACACTACAGTGTTCTCCTCAGATAGTCTGGTCACTTAACTGAGCGTATAAAAGCGTTCGGCTTTAAGTGCTCTATCCATGGAATGCAAGTGCCTTCACTGTGCACTGATTCCTTCATCTTTCCCCACATGCCCACCAGATGTCTTGCTTACTGCGATATAGCTCGTGCCCCTCACTGCCCACTTGAGGTTCCTGCTTCGTTGCATTTGCATAAATGCCAGAGTTCTCATCACTGAAAAGATGTCCAGTCGGCCCCTCCCTCCTACTGCTTCTGAGCCCTGGCTCCCGGAATCCTGCTTCATGCTGCGTGCGTTCCACTTAGTTCACACCAGGTCCTTGTCCTCTCACCAGGTCAGCCATGGAGAGCTATTGGGGACTGTCCCTGCTGCAGTGTTTCTGTCGGCGTCCAAGGCTCTTATGTTCTTGCCAGTTTCTGCTTTCTCTGACCTGGTTTAGTGAGCTGGTGTAGACGAGTTTGCTTTTGTCCCCTGACCCCTCCTCTCTCTCATCCTTTGTGGCTTTGTTTCCATAAAGTAGGGAGACATTTACCCTTAATCTCTTTAACGCTGGAAAGCCAGCGCTGAAGCTTTGGCCCCCGTAAGATTGTCAGAGGTTCACAGAACTCACATATCAATGTCACTTCTGTTCCTTCCTTCCAG
Seq C2 exon
AAGATGATGAGCCCTTAGAGAAGGACAAGAAAACACAAGACAAACATTTGAAGCAGTTTTCAGTCGTCAATAGCAAACCAATGCTGGAAAAGGCCAATCTGTCTGAGAAAACAGTTCCTCTCAACATGAATAGTGTTTCTTCGGGAAAAACACTCCATAAATATGACCCTGGCGGAAATGGCTTAGAAAATAACTCAGAAAAAACCATTGCAAAGCCAAGCAAAGCCAATGGGAAAGTAGCTGCTGATCAGGATGGGCGAGGAAAGCCAGCTCTGCACACCAAGGCTGACAGAAGTCACTCTGCGGCAAAACGGTACAGACGTAATGAAGTTAGGGATGTCAAGGGTCAAGGTGAGGGTCTCACTCAACAACAGAATACGCAGTCTGCAAGTCAGCCCTCCGAGCATCGTGAAGGTGAACAGGAGTCAGCCGGCGCTGCGAGGTCGGAGGAGCAGCCTGAGCGGAAGCGGAATGAATGCGCCGAGTGTAGGAAGACCTTTTCAAAGAGGTCCACTCTCATTGTCCACCTGAGAATCCATACCGGAGAAAGACCCTACGCCTGCAATTACTGTAGGAAAACTTTCCGTATAAAGGCAAGCCTCACTCGACACCAGCGGATTCACACCGGAGAGAGGCCTTACAAGTGCAAGGAGTGTGGCAAAGCCTTCATCGACAAGTCTGCCCTCATCGTGCATCAGAGGATTCACGGAGGGGAGAAGTCCTACGAGTGTAACGAGTGTGGCAAGACCTTCTTCCGGAAGTCAGCCCTGGCTGAGCACTTCCGGTCCCACACCGGGGAGAAGCCTTACAAATGCAAGGAGTGTGGCAACGCCTTTGGCAAGAAGTCGTACCTCATCGTGCACCAAAGAACTCACCGGGGCGAGAAGCCCAACGAGTGTAAGGAGTGTGGGAAGACCTTCTTCTGTCTGTCCGCCCTGACAGCACACCAGAGGATCCACACGGGGGAGAAGCCCTACGAGTGCAAGGAGTGTGATAAGACCTTCTTCTGTCAGTCGGCCCTCAACGTGCATCTGAGAAGTCACACCGGCGAGAAGCCCTACAAGTGCCGCCTGTGTGGGAAGTATCTGTGCACCAAGTCTGCCCTGGTGGCGCATCAGGTCATTCACAGAGGGAAGAAGACCTTCGAGTGTCCCGAGTGTGGGAAGCTTTTCTACCTGAAGTCCACGCTCACCATCCATCAGAGAACCCACACAGGAGAGAAGCATGGCTTGCTTAGTAAGTGGAGCCGAGCATCCGCTGCGAAGCCCAACTGCAGCGAGCAGAAGAGGGCGGACGCCAAGGACAACGTGCACGAGTGTCACGACCACAAGCGGCCAGCCCACAAGAGCTCCCGCCGCTTCGCGCACAAGAGAACCATATGGGAGAGGCCTTACGAGTGTGAGGAGTGTGGGCGGACCTACTGCAGGAAGTCAGCTCTCAGGCACCACCAGAAGACGCACACGGGCGAGCGGCCCTACGAGTGCAAGGAGTGTGGGAAGACCTTCTGCCAAAAGGTCTCCTTCACGGAGCACCAGCGGACTCACACCGGCGAGAAGCCGCACAAGTGCAAGGAGTGTGGGAAGTCCTTCCGCCACAAGTCGGCCTTCACCGTGCACAAGAGGATCCACACCGGGGAGAAACCGTACGCCTGCAACGAATGTGGCAAGAGCTACCGCCGCCTCTGGACGCTGACTGAACACCAGAAAATACACACGGGCGAGAAACCCTACGAATGTAACCTGTGTAAGAAGTCATTTCGCCACAAATCAAACTTCCTCTTACATCAGAAAACTCACAAGAAGTAAATTCCAGCAGGGTAACAGATAATTTACGAGGTGCCCAAATCCTGAATTACACATAAAGGTGTAAGGCCTTGTCAGCACGGGGACTACTACTGACGAGTTTCTGCCGGAGTCAGAGGGCTTACACGGACGACGTCCAACTCTCATTGTTAACTGTGAAGACATTCGGCATTTCAGACATTACACCAGGTGTGCCTGCCTCCCTTTCAAACCACGGAACAAACACTAAGTCCTACCTGCTCTCCCTCCAGTTAATTTGCATAGCGTATGATGTGGGCGTGAGGCCAGTGTTGATTCCAGATCATTACCAGTTGTTCCTGGGATAACTGGGCAGTGTCTGTTTATGAGTTTACAGTATTAACAGCTCAGACTACATAGCCTGTTTGTCCCCTGTCGCTGCTGTCTAGTGACAGGCCCTAATCCCTTCATCTGCAAAGGTGAGTCAGCCGAGCCACCCTTCACTTCCCTACCTGTAGCGACTCCCACACAGCAGTAAGCATTTGCTAAAGCCGAGTCATTGGTTTTCTAATAAGAGGCACAAGGTGGCTTGTAAGTGCCTCCTTGAGCTTCCATGTAAGCCAAGAAAACAGTGACCGCAGTTACCATAGCAAAACCAAAAATGAAGTGAGCAGATTTGAATAGTGAAGAGGATTTGGGGAGTGTTTGAGTCAAAACAGTGTCTGTGTTGTTTGTGTTTTAAATACCTCTGTTGTATTAGTGGTTTGATTATGTCAGTGTTTTCAAAAATATCTTGATTTTTTTTTTTTAATGAACATGTCCATAGGGGTATGATTTAGAATTTACCTGTCAGCTTCTGAGAAAACGTCTCCATGGTGCCAAATAGAATGACGTAGTGTGGATATGTGCATCTAGCCAGAATGTCTGCCATTCGTGGTGGGTTAATGTCAGGTCCTGGGAGCCAGCCCTGCTCTCTGATGTGCTGTGCTTTTCCTAGGACAATGAAGTGAGAAGGGCCACTGGGTATCTTGTCATGGGCCTTGCCTGTGGTTAAGCTGGCAAATCAGCCCTTGGCATGGCTGCCGTAAGTTGTGTTGTCCAGCTTAGTTTTGATAATGAGTGTCACTCTGACCTGTCTGCTGCCTCCGCTTGTGGTGTTGGGCTCTTAGGTAAGAAAAGATGCCCCTTGTTTGAGACCCATCAGAAATCCCAGTATGAACAAGATTATCTGTTTATTCAGTTTGTATTTTATATCCTTCAGTAAGGTAAATACATATTTGTGAATGCACATGTATTCGATATATACTAATATATGCTGAAACAGGAATATATGTATATATCAATAGTAGTCTTTTTCTGAAAATTTTAATAATTACTTAAAAGATTTGGGTTTGCTGTTGCAAATACAATTTTATCATCTGCTTTTAAAATTACTGATAGAGGCCTGACAAGGATTAGCAAGCAAAGGTGCTTGCTGGCAAGCCTGACAACCCGAGTTCAGACCTTCCGTCTCACGTAATAGAGAGAACTGATTTTCTTACACGCTACCCTGATTTCCACAAGTGTGATATAACATGCACACACACAACAAATACATACATGCATATATACATACACACATAAATAATAAATAAGATTTAAAGTGTTTTTAAAACTCACTGATCAGATTCTGAAGCATTTTTACCACACTTGTCAAAGTGCATTCCCTATACTTACTTTTCTTCGCTTGGTCTTAGAAAACTCCCAGCTCCTTGTAGAGGATGTTGGTGAGCTGTCTTGTGGAGGTAGTTTTTGCTCTTTGAAGATCTGTACCTAGCTGTCTAATTGTGCCTTCTGCTTGCCACTTATGAGACAAATCACAATCTTGTGATTATGGAATTGTTTCCCATTATTGGTTTGACCAAGGAAGAGAGTTTTTTCAAGTCTGGTGAGAAATATTTAAGTCCATAAATGGAAGGTCAGAGAGCCCCAATCACAGAAAGTCACAAGACACATCAGAGTGACACTTGAGGGTCCAGTGAGAGGACTCCGCTTGTTCTGCAAGCCAGCAACCCGGGACACCTATAAATGTGGACAGCGAGACCCGGCTCCGCAGGACTGTCCTCTGACTGTACGTGGGCTGCCGTCCCAAGCACACAGACAACAGTGCAGTTTTTAAAGTTGTTTTAAAAAGAAATAACTTGAAGACACGTAAAAAATCTAAAGCAACTAAATGGAAGAGAATCCTTAAAAGCAGCTGAAGGGAATGGCGACATGTAGGTCTGTGGACTTCCTACAGCTGCCACAAGAACCCATCACACTGATCAGAAGAGTGTGACGGTTCTCAGCTCACCTGTCAGGCCCAGTGCTGCGAGCCTGCTCCCTTCTGACCGCTGGAGGCCGGCTGGGCTTCTCCCGTGTGGTCTTCCTACAGCTTGTGGCAATGCAACTTCAGGTTTTGCTTCTGTCCTCACTACGCCTGTTCCTCCTCACTGTGCATGTCTGTCGTCTCTGCGGATGTCTGTCTATGTTTCCATTTTATCAGGACATGTCTGATCAAGGTCCCACCTTACTTACACGTGACCTCATGTTGATTGGCATCTGTAAAAGCCTTATTCCGTAAGGTCACATTGAAAGTATTAGAGGCTGGAGGGACATTATTGGTACCCTAAGACGTACCCCATGTTTAGCAGATTAAAATGACGGTAGATATTTGTTGTGTGAGACTTTTACTGGGGAGATGCAACACACCCTAGGAAAGAAAGTATGCCAGGCCAAAGTAACAATTACACTGAAGTCCAGCTCGGTAAGCCAGTGAGTTTATTGGGGTTACTAGCGGGTATGGGTGAGGGCTTGCTTACAGGAGCAGGATGGCCCAGAAGCAGCTGCTTTATCAAAATCCCCCTCCAGCTCGGGTGGTGAAAGCTGCAGCCCTGGACCTCCCTGCCGAGCCTGCAGACGGCTCAGCAGCCTGACTGGCTAGTCTCCTTCCCCAGCGATTATTACTGCATCTATAAAGACTCTGAGGGGCTTCCAGATGGTGTGGGGTAACATCACCTGCCACCAAGCCAGACAACCTGTGTTTGGTCCCGGGACCCACATGGTACAGGAAGAGAACCAACTCCTGCAAGCTGTCCTCGTGTCCCCCACACACTCTGGTCCCCAAATACACAAGAAAATGCAATTTTTATTTTTTGAGACATGGCTCTCTGTATCGCCCTGGCTGTCCTGGAACTCGCTCTGTAGACCAGGCTGGCCTCGAACTCACAGGAGATCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCTGCCATTACTACCCAGCATAAATGTATTTTTTTTAATGAAAAGTTTTTTTAAAAAATATTTATTTTTATGTGCATTGGTGTTCTGCCTGTATGTCTGTAGGAGGGTGGCATATCCTCTGGAACTGGGATTACAGTTGTGAGCTGCCATGCGGATGCTGGGTATTGAACTCTGGTCCTTTGGAAGAGCAGCCAGTGCTAAGTCATCTCTACACACACACACACACACACATCCAAATGAAGGGTTAAAGATCAGGGCAATTGCATGTTTATGTGCCAATTGGAAACTCTTTCTGAAGGGGATGTGTCTGATTTCTTTTTTTTGGGGGGGGGGAGGTGTTTCATTGCTGTGATAAAGACACCAAGACCAAAGCAGCTTGGGGGGGGGGAGGTGTTTCATTGCTGTGATAAAGACACCAAGACCAAAGCAGCTTGGGGGGGGGGGAGGACTGATTTCCTCTTCCTGCTTACAGTCTGTACCTATGGTAAATGAGGGCAGAACCTGGAGGCAGGAGCTGGAACAGGCCATGGAGGAGCGCTGCTTGCTGGGTTGGCCAGTCTGCTTTTTTTTTTCTTTTTTTTTTTTTTTTTCATATCACTCAGGACCACCTGCCTGGGGATGGCCCCACTCCCAATGAGCTGGGCACACATCGAGAAAATTCTCTACAGGCCAATCTGTTAAGAGGCTTCCTCCTCCCAGATAAGAAGGATGGAAGGAAGTTCTATTTGGGGCAGTGAGTTGAGCTGGAGTCTGGCGCACAGGGAGGCCCTATAATGATAGATGTGGTGTTGCCCTGCTGATTCATCCGCAGGGTGGGAGCTTGTGGACTGCTGTTGTAATTGCTCCTATTCTGCCCGTGAGGCAGAGAGTAGCCATTCTCTTAGAGCAGGAGGTGAGTTTTTAGAAATTAGCCATTGATGGAGCTGACAGCTTTCAGTTCTGCCCTATTGCTTTGTGTATAAAGCTGGCTTCTGTGGCACCCCACTGGGGGGAGTCTTTGGATATTTAGGAAAGTGTCTATTTTCTCAGCTAATGTCTTCATGCGATGCCTTAGAGTGCCCTGTTGTTTGCAGGAATGCGCTGACACTGTCCACTGACTGCATACAGTCAGCAGCCCATGTTGAAATCACTTGGCGATCTCATCTTCCTGGCTTACTGGGAAGCTAGCTTAGCAGACATTCTCTAAACTAGGCACAGCGCCTCTATGTCTGTGGGCTGTGTGAAGTCAGTGGGACTACTTGGGAAAGCCTTGGCTTCCACCTATACAGCAGATCCTTCACATCTAGTGTGAAGTGTTCAAAAGCTGCACCTGATGCCTGCAGACCCCACAGAACGCCCCCCACACAGGGACTATTATCAACAGGGCTCTCTGGCCACCAGATATCTGGATGTCCCAGTCAGTGACTCTCTGCTGGGGTTTGAGCTCTCTCAGGTCCTGTGTCATTCCAGATTCAGTCAAGAGCAGAGCTCTACAGCCGCTTGCAGGCATTCATTGCTGACTCTAACTCCAAAGGCACAGCTGCCTCTTCCTCTTCTCCCTCTTCCCAGAAACCGCTGAGACTTACAGCCTGCCCGCCTGCCGTGTATGTGTATATACACAGAGGTGTGACTGTAGGCAACTGTGGGGAAGCTGTGGCATGACTGAGCCCGTGTCTCAGGCCTCGGTGTGAAATCTACAGACCGAGCAGCCAGGAAGAAAATGTGAACGTCAAATGACAAAGCCAGGCACATGATGCGAGTGAGTGTTCCATACAAGTGAAACCATCTGTGGTGTCACACTCTCAGACACTGAACAACTTGACCCAAGTTAGAGTGGAGACTGGAAGGACAGGGTGTAGCATTGCCCTGAGTCCCCCACGAAGTTCCCCCTCAAAGCTGTCCCATCAGCTCAGAATGTACTAGAGAGGGCTGAGGACTGAGTACCACTGCTGGTTTTCTGAGGCTGTTTGTCTTCTGAGAGCATGCTTCCAGAAGGCCAGAGAGTGGAGTGTCACCTGCTGCACACCTAAGCTATATATTACAAGCTATAGACCAGTACAATATGCTATGGCAGAGAGAGGCACCAGGCTGGGTACTGTATGCAGTTGTAAGGATTGTGTGTATCTAAATAGAAAAGGCCCAGTAGAGGTGCTGCGCAACTTAGTTACTGCTCCTTGCTGTAAGAAAGTATCCTTTAAAGGCAAGTGAAGGGAGAAAAGGTTTGGCTCACAGTTCCAGAGGTACACAGTCCTCCATGGCAAGGAAGATGTAGAGGCTGGTAGCCAGGGTATGGAGTCAGGTGATGCACTATAAAACTGCAAGGCCCACCCCCAGTGACCCACTTCCTCCAGTAAGGCTCCACCTCCTGTATTCTATAACCTGCCAAACAGCACCAGCAGGTGGGGACCAAGCATTCAGACACATTAGCCTATGGGAGACGTCTCATAAACAAGCCACAATCCGAGGGTATAGGAGTTTTTCCACTCCATTATATACTCTTATGGGCCCACTGTCAATCAAAGCATCCTTATGTGACTCTCATCCGTATATGCCAAATAAACTCACTTCTGTCAATAAAAAGTAAGATATCAGCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667:ENSMUST00000103084:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.344
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF097235=Zn-ribbon_8=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGGGTAGTGGAAAACT
R:
TTTGCCGCAGAGTGACTTCTG
Band lengths:
352-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types