HsaINT0186913 @ hg38

Intron Retention

Gene

ENSG00000198185 | ZNF334

Description

zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]

Coordinates

chr20:46499632-46504306:-

Coord C1 exon

chr20:46504214-46504306

Coord A exon

chr20:46503098-46504213

Coord C2 exon

chr20:46499632-46503097

Length

1116 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

3' ss Seq

AATTGTGTTCCTTTTTCTAGACA

3' ss Score

9.05

Exon sequences

Seq C1 exon

GGTATCATGTTAGCAAACCAGATGTGATTTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGTGGAGGAATTCTCAAATCAGAACTACCCAG

Seq A exon

GTAAGTAAATGATAACTGAGCAGGTGGAACCAATGGAAATGAGAGTTCCATGGTGGTCGGTGGTAATAGTTGGCATCGTAATGTTTTTCATGAATTTCTTTTTGTTGGCCCAGACCTTTAGAAGTGATTGAGGTTGATTAACTGTCATGCTATGGACATCTGAAACATTCTCCCCAAATAAATAATTGAAATTTATAAAGATGTTTGCCATTAAGTTACCTATCCCCAAAATTCAAGTTCTTCTTTTATCACACCTTAAACTTTATTTCTGTAGCATTCTTTGTTGCCTCCCTTGCCCCACCCACCATTGTCATAGGCTTGGTTTATATTTCAGACATTCAGAGATCTGTCATGATCTTTTTAATTGTCTTCCATTTTTCTCTACGTCACTTAACAGAAATAACACGGTTTCCCTTTCCATTCTACGCTTCACCAGGATCCGGAGTAGGGTGAGGCAAACAAGGTGCCTGGCATGCAAAATTTAGGAAGACACTCAACTCTCAGGATTGCACAGGTGCCCTGGGTATCCTGCTTGCCTTCCTCTAGTCCCAGCTCTACTCAGCCCACAATCTTACTTCCCTTTGCACTGTACAAATTCGAGAGTTCCATGTCACTGCAAAAATTTCAGATTTACCTCTTCCTTCTTGTGTGTTTTGATAATAACTGACCATCTTTCTGATATCTGTTGTACCTGGTCTCACTGTATGACTATCTTTCTCTAAGTGCTTACTTGACTCTTGTCTGTTTTATTCAACACTCCATCAGCCACACTTCCAGCATACTTTGTGTACTATTCCTTGTGACTATTTACTTTTTCCACTCAATGTTTAGTAGTATTTGTAAAGTGTCAAAGGTACTTGTATTCTTTGCTAGTTTCCTCTTCCTTTCCCCCTGTTAAATAGTGGCTGGTATGGATGGATTTGCTTTTTTGTATTTTTTGTTTCTGTATTTCTTCAAATCAACCAAGTAAGAGATATTTGCACTTGAAATTTGTTTAATCTTGGAAGGCTTGGCCTGAAGTCTAACCCCTAAAACAATGCATTTCTAAGGAATTCTCATTTCATAGCAAACATATAAAGGCTCACCAATTACCGTTAATTGTGTTCCTTTTTCTAG

Seq C2 exon

ACATTGATGATGCCTTAGAGAAGAACAAGGAAATCCAAGATAAACATTTGACACAAACTGTATTCTTCAGCAACAAAACACTGATTACAGAAAGAGAGAATGTATTTGGGAAAACACTTAATCTGGGCATGAATAGTGTTCCCTCAAGAAAAATGCCCTATAAATGTAATCCAGGAGGAAACAGTTTGAAAACTAATTCAGAAGTAATTGTTGCAAAGAAAAGCAAAGAAAACAGAAAGATTCCTGATGGATACAGTGGATTTGGGAAGCATGAGAAAAGTCATTTGGGAATGAAAAAATACAGATACAATCCAATGAGGAAAGCCAGCAATCAAAACGAAAATCTTATTCTGCACCAGAACATTCAGATTTTGAAACAACCGTTTGACTATAATAAATGTGGGAAAACCTTCTTCAAGAGGGCAATTCTCATTACACAAAAGGGGAGACAGACTGAAAGGAAACCAAATGAATGTAATGAATGTAGGAAAACCTTTTCTAAGAGATCTACCCTCATTGTACATCAGAGAATTCATACAGGGGAGAAACCGTATGTTTGTAGTGATTGTAGGAAAACTTTTCGTGTGAAGACAAGCCTCACTCGACACCGAAGAATTCATACTGGAGAGAGACCCTATGAATGCAGTGAATGCAGGAAAACCTTCATTGACAAATCTGCCCTTATTGTACACCAGAAAATTCATGGAGGGGAGAAATCCTATGAGTGTAATGAATGTGGAAAGACCTTTTTTCGGAAGTCAGCCCTGGCTGAACATTTCAGGTCACACACAGGGGAGAAGCCTTACGAATGCAAGGAATGTGGAAATGCCTTCAGCAAGAAATCGTATCTTGTTGTACATCAAAGAACTCACAGAGGAGAGAAGCCAAATGAATGTAAGGAATGTGGGAAAACCTTCTTCTGTCAGTCAGCCCTTACTGCGCATCAGAGAATTCACACAGGGGAAAAACCCTATGAATGTAGTGAATGTGAGAAAACCTTCTTTTGTCAATCTGCCCTCAATGTGCATCGAAGAAGTCATACAGGAGAGAAGCCCTATGAATGCAGTCAATGTGGAAAATTTTTATGTACGAAATCAGCCCTCATTGCACATCAGATAACTCATAGAGGAAAGAAGTCTTATGAATGTAATGAATGTGGGAAATTTTTCTGCCATAAGTCAACACTCACTATACATCAGAGAACACACACAGGAGAGAAACATGGTGTGTTTAATAAATGTGGTAGAATCTCCATTGTGAAGTCAAACTGCAGTCAGTGTAAGAGAATGAACACAAAGGAGAATCTTTATGAGTGTAGTGAACATGGGCATGCCGTCAGCAAAAACTCACACCTCATTGTACATCAGAGAACTATATGGGAGAGACCATATGAATGCAATGAATGTGGGAGAACCTACTGCAGGAAGTCAGCCCTGACTCACCATCAGAGAACACACACAGGACAGAGACCCTATGAGTGTAATGAATGTGGGAAAACCTTCTGTCAGAAGTTCTCCTTTGTTGAACATCAGCGAACTCACACTGGGGAGAAACCATATGAATGTAATGAATGTGGGAAATCCTTCTGCCATAAGTCAGCCTTCAGAGTCCATAGAAGAATTCACACAGGAGAGAAACCATATGAATGTAATCAATGTGGGAAAACCTACCGTCGCCTGTGGACTCTCACTGAACATCAGAAAATACACACAGGAGAGAAACCTTATGAATGTAACAAATGTGAGAAAACATTTCGCCACAAATCAAACTTTCTTTTACATCAGAAATCCCACAAGGAATAAGTTCCAACAAAGTAATAAATTCCAACAAAGCAACAAATCAAATAACTTACACAATGCTAAACTGTGAGTATGTATAGAGGAGTAAAATCTTATAAATGTAATGAATATGGAAAATTTTTCTGCCATAAGTCAACCCTCAATGTAACATCAGAGAAATCATGTAGGAAAGAAATAATTTGTTTAATAAATGTATTATTCATTGTGAACTATGAAAATATTCAACAGCAATTCAAAGGTTATGCCAAATGTGCCTCCCTTTTAAAATAATGAAACAAACATTGTTTAAGTTAAATTGTTACTTGGTTCCTCCCCACAGTGTTACTTGATAGTGTATGTTACGAGGTGTGAGGATCTGACCTTCATTTCAAATCAATACCATTGTTTGATAGTTGAGTAAGTTACAGTTTCTCAATTTATGGTGTATTTTCAGATTTGGCAGATTTTTTGTTGTCTGCTAACTCCATAGTCTTCTAGTAGTGGACTGTATACCTTTATCTGCAAAGGTGACAACTCAGGAGAACTAACCATTGTACTCTATGCACCCATGGTAATTATACCCCAGGTGAGCATTTTGTAAAGCTGAGCCAGTGAAAGCCCTTCCTAAGACCTTTCTAATGGAAGATAGGCACAGGATAACTAGTTCATGATCCTGAAGCTTTCAGCTAAGTCAAGAAGACGGCAATTGCAGTAGGAAAAACATGGGAAAATAAGCATTCTTGAACAACAAAGAGAATTTGGATGATGGTTGAATCCAAAAAGTGTTTATTTCTCTGGTTTTAGTATTCTGTAATATCCACTCAACCCCATCTACCAGTGGTTTATGTCAATTAGTATGTTTTCAAAAATCTCTTGGATTTCCTAATCAACATGTTCATTAGAGGTATTGTTTAGAAGTCACTGATCAAATTCTGAGAACAAAAGGCGCCTGGGATGCTGATTAGGATTACATTATATGGATATATATGATGAGGTAGGATTGCCACTTTTATGGGGTTATTGGGAAATGTTTACCTTTCAAGTTCTGATTTCCATGAGTGGGATTTTCCCTATACCCATTCCTAGCTTCTCTGCCACATTATGCATTCTGCCCCAGGCATGAGGAAGTGGGCTTATCTAGTTGGTAAGATAGTGATGGGTAACTGGGTTTGCTCAGCTGAACTCCCTCTTCATTGTGGGCTGACCTGCAAGTATAATTTCTTGTCACAGATATTGCCTGTGATTGGTAAATTGGTCTAATTCTGTCATTCAGCTAATTGGCCCATTAGCTGAATGGTCACACTAAGTTGCATCCTCCAACTCAATTTGATCAGTAATAAAAGTTTCATCCTGCCCCCTGTCTGCTACTTAATTTTTTATCGTTTAGATGGGGGGAAATTGTGCTATTTATTTGGGGCCCTTCAGAGAACCCAATATGAACATGATTTATCTATTTATTCAGTTTTTATGTCCTTCAGGACAGATAAATGTATGTATACACACATATACATGTGTTAATATATGTAAGTATATACATATGTTTAAATGTATGTGTATGTGTATACTGATCTTGCTCTTTTCCTGTGAAATGTATTAATAGTCACTTCAAAGATTTGGTTGCTATTGTGAAAGAAATTAAGTTACCTTTCACTTTGAAACTAATAGAGTAAAGAAAAACAAAAATACCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000198185:ENST00000347606:4

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.030 A=NA C2=0.133

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000473194