HsaINT0186913 @ hg19
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45129707-45132945:-
Coord C1 exon
chr20:45132853-45132945
Coord A exon
chr20:45131737-45132852
Coord C2 exon
chr20:45129707-45131736
Length
1116 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AATTGTGTTCCTTTTTCTAGACA
3' ss Score
9.05
Exon sequences
Seq C1 exon
GGTATCATGTTAGCAAACCAGATGTGATTTTCAAATTGGAGCAAGGAGAAGAGCCATGGATAGTGGAGGAATTCTCAAATCAGAACTACCCAG
Seq A exon
GTAAGTAAATGATAACTGAGCAGGTGGAACCAATGGAAATGAGAGTTCCATGGTGGTCGGTGGTAATAGTTGGCATCGTAATGTTTTTCATGAATTTCTTTTTGTTGGCCCAGACCTTTAGAAGTGATTGAGGTTGATTAACTGTCATGCTATGGACATCTGAAACATTCTCCCCAAATAAATAATTGAAATTTATAAAGATGTTTGCCATTAAGTTACCTATCCCCAAAATTCAAGTTCTTCTTTTATCACACCTTAAACTTTATTTCTGTAGCATTCTTTGTTGCCTCCCTTGCCCCACCCACCATTGTCATAGGCTTGGTTTATATTTCAGACATTCAGAGATCTGTCATGATCTTTTTAATTGTCTTCCATTTTTCTCTACGTCACTTAACAGAAATAACACGGTTTCCCTTTCCATTCTACGCTTCACCAGGATCCGGAGTAGGGTGAGGCAAACAAGGTGCCTGGCATGCAAAATTTAGGAAGACACTCAACTCTCAGGATTGCACAGGTGCCCTGGGTATCCTGCTTGCCTTCCTCTAGTCCCAGCTCTACTCAGCCCACAATCTTACTTCCCTTTGCACTGTACAAATTCGAGAGTTCCATGTCACTGCAAAAATTTCAGATTTACCTCTTCCTTCTTGTGTGTTTTGATAATAACTGACCATCTTTCTGATATCTGTTGTACCTGGTCTCACTGTATGACTATCTTTCTCTAAGTGCTTACTTGACTCTTGTCTGTTTTATTCAACACTCCATCAGCCACACTTCCAGCATACTTTGTGTACTATTCCTTGTGACTATTTACTTTTTCCACTCAATGTTTAGTAGTATTTGTAAAGTGTCAAAGGTACTTGTATTCTTTGCTAGTTTCCTCTTCCTTTCCCCCTGTTAAATAGTGGCTGGTATGGATGGATTTGCTTTTTTGTATTTTTTGTTTCTGTATTTCTTCAAATCAACCAAGTAAGAGATATTTGCACTTGAAATTTGTTTAATCTTGGAAGGCTTGGCCTGAAGTCTAACCCCTAAAACAATGCATTTCTAAGGAATTCTCATTTCATAGCAAACATATAAAGGCTCACCAATTACCGTTAATTGTGTTCCTTTTTCTAG
Seq C2 exon
ACATTGATGATGCCTTAGAGAAGAACAAGGAAATCCAAGATAAACATTTGACACAAACTGTATTCTTCAGCAACAAAACACTGATTACAGAAAGAGAGAATGTATTTGGGAAAACACTTAATCTGGGCATGAATAGTGTTCCCTCAAGAAAAATGCCCTATAAATGTAATCCAGGAGGAAACAGTTTGAAAACTAATTCAGAAGTAATTGTTGCAAAGAAAAGCAAAGAAAACAGAAAGATTCCTGATGGATACAGTGGATTTGGGAAGCATGAGAAAAGTCATTTGGGAATGAAAAAATACAGATACAATCCAATGAGGAAAGCCAGCAATCAAAACGAAAATCTTATTCTGCACCAGAACATTCAGATTTTGAAACAACCGTTTGACTATAATAAATGTGGGAAAACCTTCTTCAAGAGGGCAATTCTCATTACACAAAAGGGGAGACAGACTGAAAGGAAACCAAATGAATGTAATGAATGTAGGAAAACCTTTTCTAAGAGATCTACCCTCATTGTACATCAGAGAATTCATACAGGGGAGAAACCGTATGTTTGTAGTGATTGTAGGAAAACTTTTCGTGTGAAGACAAGCCTCACTCGACACCGAAGAATTCATACTGGAGAGAGACCCTATGAATGCAGTGAATGCAGGAAAACCTTCATTGACAAATCTGCCCTTATTGTACACCAGAAAATTCATGGAGGGGAGAAATCCTATGAGTGTAATGAATGTGGAAAGACCTTTTTTCGGAAGTCAGCCCTGGCTGAACATTTCAGGTCACACACAGGGGAGAAGCCTTACGAATGCAAGGAATGTGGAAATGCCTTCAGCAAGAAATCGTATCTTGTTGTACATCAAAGAACTCACAGAGGAGAGAAGCCAAATGAATGTAAGGAATGTGGGAAAACCTTCTTCTGTCAGTCAGCCCTTACTGCGCATCAGAGAATTCACACAGGGGAAAAACCCTATGAATGTAGTGAATGTGAGAAAACCTTCTTTTGTCAATCTGCCCTCAATGTGCATCGAAGAAGTCATACAGGAGAGAAGCCCTATGAATGCAGTCAATGTGGAAAATTTTTATGTACGAAATCAGCCCTCATTGCACATCAGATAACTCATAGAGGAAAGAAGTCTTATGAATGTAATGAATGTGGGAAATTTTTCTGCCATAAGTCAACACTCACTATACATCAGAGAACACACACAGGAGAGAAACATGGTGTGTTTAATAAATGTGGTAGAATCTCCATTGTGAAGTCAAACTGCAGTCAGTGTAAGAGAATGAACACAAAGGAGAATCTTTATGAGTGTAGTGAACATGGGCATGCCGTCAGCAAAAACTCACACCTCATTGTACATCAGAGAACTATATGGGAGAGACCATATGAATGCAATGAATGTGGGAGAACCTACTGCAGGAAGTCAGCCCTGACTCACCATCAGAGAACACACACAGGACAGAGACCCTATGAGTGTAATGAATGTGGGAAAACCTTCTGTCAGAAGTTCTCCTTTGTTGAACATCAGCGAACTCACACTGGGGAGAAACCATATGAATGTAATGAATGTGGGAAATCCTTCTGCCATAAGTCAGCCTTCAGAGTCCATAGAAGAATTCACACAGGAGAGAAACCATATGAATGTAATCAATGTGGGAAAACCTACCGTCGCCTGTGGACTCTCACTGAACATCAGAAAATACACACAGGAGAGAAACCTTATGAATGTAACAAATGTGAGAAAACATTTCGCCACAAATCAAACTTTCTTTTACATCAGAAATCCCACAAGGAATAAGTTCCAACAAAGTAATAAATTCCAACAAAGCAACAAATCAAATAACTTACACAATGCTAAACTGTGAGTATGTATAGAGGAGTAAAATCTTATAAATGTAATGAATATGGAAAATTTTTCTGCCATAAGTCAACCCTCAATGTAACATCAGAGAAATCATGTAGGAAAGAAATAATTTGTTTAATAAATGTATTATTCATTGTGAACTATGAAAATATTCAACAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-ZNF334:NM_018102:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF128122=PDZ_1=FE(56.4=100)
A:
NA
C2:
PF128122=PDZ_1=PD(24.1=2.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.8),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF097235=Zn-ribbon_8=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGAGAAGAGCCATGGA
R:
CCAAATGACTTTTCTCATGCTTCCC
Band lengths:
342-1458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)