BtaINT0166099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014768 | ZNF786
Description
zinc finger protein 786 [Source:HGNC Symbol;Acc:HGNC:21806]
Coordinates
chr4:113021969-113026080:-
Coord C1 exon
chr4:113025928-113026080
Coord A exon
chr4:113023798-113025927
Coord C2 exon
chr4:113021969-113023797
Length
2130 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AATCTTGTTTTCAGTTTTAGAAA
3' ss Score
3.69
Exon sequences
Seq C1 exon
ATAATGGACTTCCCAAACCAGAACTAATATCCTGGATTGAGCAGGGGAGAGAACTCTTTAAGAAATGGGGAGAATCACAGGAATCAAGAAACATAATTTGCTCTGCTGCTGATTTGCATTTTGATCCACTTATTGAGGGACAGCCATTTTCAG
Seq A exon
GTGAGTTTTAAGATGATTTCTTAAGGCTCTGTCCTTAAGACATCACATTCATGTTTCTTAGTTCCATTTCTTTGGTGGTGCCTTCCTGTTTGACTGAACTGAGGCTTAACATCTGGTATATTCCAGAGAAAGGCAGTAAAGCACAGTAGCTAGGATCATGGGTTCTGCATCCTGAGTCTGGGTCCTGCCTTTTCCAGGTAACCTGGGCCAGTTATTCATCCTCTTCTGGTGGCTCAGATGGTAAAGAATCACCTGCAATGTGGGAGACCAGGGTTTGATCCCTGGGTTGGGAAGATACCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCACAGACTGTATAGTACATGGGGTCACAAAGAGTCGGATTAAATGAGTTTATATATGTAGATGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCACTGAGGGTCGGGCCCAACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAAAAGGAAATGGCAACCCACTCCAGTGTTTTGGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGGTACCGTCTATGGGGTCGCACAGAGTCGGACATGACTGAAGTGACTTAGCAGTAGCAGCATATATGTAGATTGTTAAAATGATATCTGGCAACACAGTAAAGAGTTCAGCAAATACGCGCTATTCTTCAGGCAGGGGGAATCAGCAACTCCTTTGTTTCTTGTCATGATAAGAAAGTCTAAGATTTTTGGATTCTTAACAGTCAGTATTAGAGCAAGGAAAAAGTGAGTCACTTAGTCATGTCCGACTCTTTGCAACCCCATGGACTATATAGTCCATGGAATTCTCCAGGCCAGAATACTGGAATGGGTAGCCTTTCCCTTCTGCAAGGGATCTTTCCAACCCAGGGACTGAACCCAGGTCTCTTGCATTGCAAGCAGATTCTTTACCAGCTGAGCCATGCAGGAAGCCCAAGAATACTGGAGTGGGTAGCCTATCCCTTTGCCAGTGGGTCTTCCTGACCAAGGAATTGAACTGGGGTCTTCTGCATTGCAGGCAGATTCTTTAACAGAGTAAGGAAAGGGAAAGTCAAATGAGAATATCATTCCAAGAAATCTTGTCAATAGTTTACTTTTTAGCTGCCTTTTTCAGGAGAGTAAAGAGTTTTACTCACAAATTATTTCACTTTTTACCATCTGTTATCAGTTCTTCTAAGAAACCTTTTTACAAGATTGATAGGAATAGAGGTGAGGAGGGAGAAGCAGCTGGTCTTAGGGCAGCTCACGGGTTACACGTGACCATAGTGGTGGTGTGTAGTCTCTACGCTGTGTCTGACTTTTTTGTGACCCTGAGGACTGTAGCGCACCTCTGTCCATGAGATTTTCCAAGCAAGAACCATGGAATGGGTTGTCATTTCCTTCTCCAGGAAGGAGATCCCTACCCAGGGATCAAACCTACATCTCCCGTGTTGGTAAGCGGGTTCTTCACCACTGAGCCACTCGGGAATCCCAACCATAGTGTTAGTCAGGGCTTAATGCTGCCAGGAACAGTACCGTCATTATTTTTTGAACCAGGAATGTCTGCACATCCAAATGGGACAGGACTGGTGGTCCCCAGGTCATAATAATGGTGAACATTTACAGAGTACCTGCAGCATCCCAAGCCCACATTAAGCACTTTACACACATTAACTCATACAGTCCTCATAACAGTTATGTATTGCTGTTTCCATTTCTAACAGGAAAAGGAACTGAAGCTGGAGGTTAGCTTGACAAAGGCAGCACAGTGAAAAGACTGGATTTGAACCCAGTCTGATGCCAGAGACTAGGCCCTACGCTTGTGACCTAAGTGTCCTTTTTTTAGTATTCTAAGATAGGTCTGTTCAGTTTAGTCCTAAACTAGGGCTCATGATTCTCCTGGTCATGAAACTCACTGCCACTGAAAGGAGCTGCTGGTTTAGTTCAGTGAAAGTTGGGCTCCTGGGCCACCTCAGATTACCCCTTCTGGCCACAAAAGCCTTAGCCATGACATAGGCTGGGACACTGACTGAATCTTGTTTTCAGTTTTAG
Seq C2 exon
AAAACCAACAAGCTGTGAGTTCAGAAGAAGCTCATTACTATTTCCAAGTAGATCCTCTTCAGAGCCACCGTTCCTGTAAACCCTTATCAGAAAAAAGTGAAGATGTTTCTTTCAGGCCTGACCAAGCCGTCGCCCTCGTGAACCCACAGAGACCTAACACTTGGGCTCTACTCCCAGCGGTCCACAGCTCCAGGGAACCCACCCAAAGAGATAAAATCGCCAGCCCCAGGGCCCTGGGTATCCCAGGCTTCCAGAAAACCGCCTCAGGGGAGGGCCTCCAGCAGTCCTGTGCCTTCTGTGGGGAAAGCTTTTGGAATGAGGACCTCTTAGAGTGGCACCAGGGGAGCCACTCGAAGGCCTGGAAGCAACTCAGCAAACAACCCGAGGCACAGCAGCTTCGGAGCCAGACTCACTTCCGCTGCCCGGGATGTGGGCGGGGCTTCCGCCGGAAACCGCACTTGCTTAGCCCCCTGGCGGTCCGGGCTGAGGAGAGCCGCCCGCTGGGCCTCGAAAGTGAAGAAACGTGTGGCCACCGTGTGACACCGCCAAGGCCGTCTCCATACCCCGGTTGCGACGAGGGTGCCTCCCGGGGCCCCCCGGGCATGGAGAGGCCAGTCTCCCCGAGAGAGGGCGCCGGGGCGGCCTCTGAGCAGGACGAGCTCCCTCCGAGCTCGAACCTAGCTGGTCAGAAGTGTGGCCGCTGGGCTGGGGGGCCGGAGGCCCTCAAGCCTGGCCCCGGAGGGGAGAGACCGTCCTCCTATGGTGCGTGCAGCCGGCGACCCTCCCAGCGGTGCAGGCTCTCCGACCACACTCACGTGCACCGCGCGGAGCGGCCCTGCCGGTGCGCTGAGTGTGGTCGGGCCTTCCGCCAACGTGGGCGGCTGCGGCTCCACCGGCAGCCGCCCTCGCATGAGCCGCCCTGCACAGGCCCGGAGTGCGGCCTAGGCTTTCGCCTGAGGAGCGCGCTGCAGGCCCACGGCCTGCGGCACGGAGGTGAGAGGCCGCTGGCGTGTGACGAGTGCGGCCGCGGCTTCGCCCATCCGTGCAAGCTGCGCGAGCACCTGCGGGTGCACAGCGGCGAGCGGCCCTTCTGCTGTGCCGAATGCGGCAAGAGCTTCCGCCTCAAGGGCATCCTGAAGGCACACGAGCGCACGCACAGCCGCGAGCGGCCCTTCCAGTGCGCGGAGTGCGGCCGGGGCTTCACGCGGCCGTCCAAGCTGGCTGAGCACTTCCGCGTGCACAGCGGCGAGCGGCCCTTCAGCTGTGTGGACTGCGGCCGCCGCTTCCGCCTCCAGGGGCAGCTGCGGAGCCACCGGCGCCTGCACACGGGTGAGAGGCCCTTCCCGTGCCCCGACTGCGGTAAAAGCTACCGCGTGAAGGCCGACCTGAAGGCGCACCAGCTGCTGCACGGAGGCCCGATGCCCTTCTCCTGTGAATGCGGCAAGGGCTTCGCCAAGCAGTCCAAGCTCGTGGAGCACGTCCGGACGCACACAGGCGAGAAGCCCTTCCAGTGTCCACAGTGTGACAAGCGCTTCCGCTTGAAGGCGCAGCTGCTCAGCCACCAAGGCCTGCACACCGGGGAGAGGCCTTTCCGCTGCCCTGAGTGCGACAAAAACTTCCGGGAAAGGGGCCACATGCTCCGGCACCAGCGCATCCACCGGCCCGACCGTCCGTTCGCCTGTGCGGACTGCGGCAAGGGCTTCATTTACAAGTCGAAACTGGCCGAACACGTGCGAGTGCACACGAAATCCTGCCGTGTCCGCAGAGAGCCTGACGTTAAGAAAAGGCTCAGCCAGCTGTTTGAGATGATCGAGGCCGACTGGAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014768:ENSBTAT00000019646:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]