MmuINT0179874 @ mm9
Intron Retention
Gene
ENSMUSG00000051499 | Zfp786
Description
zinc finger protein 786 [Source:MGI Symbol;Acc:MGI:3026883]
Coordinates
chr6:47769265-47775195:-
Coord C1 exon
chr6:47775040-47775195
Coord A exon
chr6:47771701-47775039
Coord C2 exon
chr6:47769265-47771700
Length
3339 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTTTGTTTTCACTTTCAGGTA
3' ss Score
13.11
Exon sequences
Seq C1 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATTGAACTTGGGAGAGAGCTCTTCGGCAGCTGGGGAGAAAAAAAGAAACCAGACAAAGAAACTCACTGCTCTATAGATGATGTGCATGTTCATCTAGCCATTGAGGAACAGTTACTTGAGA
Seq A exon
GTGAGTATGAAGAACTTATCGTCCTAGTGGAGGATGTGATGCAGACCTGTAGTCTCTGCACTGGGAGAGGATACAGGGCGAGGGGAGGAGCTCAGAGCTATCCTCATTGGCACAGTGAGTGCCAGTCCAGTCTGAACTGTGTGAGATCCTGTCTCAGAGAGAGACACACACACACACACACATATACACACACAGAGGAAACCATAGTTTTAACCTAAACACACCACATTCAGATTTATTTCTTTTTTTTCCCCTCTGTTGCGGTAAATCTCCAACCCAAATATGCCCCGGCAATGAAAACACAACTCAGTTAATATGCATACATGCTGTGTGCCTAGATTGGGCAGATCTACTGCTACACTACCATCTTCTCCATCTGTGAAACCCCGTAGAACTTGCAGTTTCTCTAGGCCATGTGCTTCTGCTCCACTTTTCTTCTTCCTCCACCTGTGTCTGTTCTCTCTCCCACTTTCTCCTTCTTCTCTCTCCCCACCTTCTGTTCCACCTTCCCTTTTTCTGCCCAATCAACAGCTCTCCTTTATTTTACAAATTAAGGTGGGAAACAGGTTTACAGGGAATCACCTGAATGCTGACTCATTCCTCAGTCACTGCCACTTACAGGAGAACGGAATTAACTTCAAACATAATTAGCCCCAGGGCTATCCACAACATCTCTCCTCCCCTCTTTTCTTCCCGTTTGTCTGAACCAAGGCTTGATGCTGCATATATTTTAGAGAGGGGCTGTAAACCATAGTGGTTAGTGTGAGAACTCTGAAGCCTGAATCTGATCTCTTCTTTTGTAGGGGACAGTCAGTTTCTTTTCTACTGTTGTGATAAAAAAAAAAAACCCAATGACCAAGACAGCATTTGGGGTGGGGGAAGGTGCTTATGGTTGCAGAAGGTTAGTTAGAGTCCATGACCATCATGTCAAGGATGTAGTATGTATCAGGCAAGCAAGAACTCACATCTCAGTCCACAAGGAGAGGCAGAGAGATCCAGCTGGGAATGGCGTGGGCTTTTGAAATCTCAGCATTCACCTCAGTGACACATGTCTTCCAATAAAGTCACACTTCCTAATCCTTGCCAAACAGTTCTACCAACTGGGGACCAAGTATTTAAACATATGAGTCTATGGGGCCATTTTCATTCAAAGCACCACAGTGACTTTAGGCAGAATATTTAAACTCTTGGTGTATAAAATGCAGCAAGTACAAGAACCTGTAACATCATGTTAGGAAGGTTCTTTGTAATGAATGAGAAAGAACAAAGCTGGGTTTGGCTTTCCCTACCTTTGTGACCAAAGCAGACTTCGAGCTATCAAAAGAGAAGTCACATACTACCAATATACATGGCTCAATGTAGTCATTCCTATTCCAAAAACGAGGAATGGGGACATAGCAAGAAAAAGAGGACCAGAGCAAGACCCATATCCAGCAGGGCAAATAGTGAACCTGCAGCTCCATATCTGTCACTAGGGTTATGTTGGAATTGTCTGGGCTCCATTGGCCTTGGGCAGCTCCATTTCTCTATTATGAACTCTTTTCTTGGACCAGCTCCAGTTTGTTCCTGCAATCTTCCTGAGTCCTGGCATCTCTGACACTCCTGGGTCTGCACTACAACCTAGGCTTTTCCTTCCTAGCTTCACATCACGACCTCGGAGAGACTCTTTGCAGGAAATCTGGCCATGCCACACGTTGCCTGGCCTCAATTTCTGTCTAGAACTGTGGTGCAAGCCTTCAAGATCCCTTTACTCTTTGTATCATTCATGCTTATAAAACTAGTACCACATGAATAACACTGCCAACCTCTGTTGCCAACTTGAGATGTAGCCTGGCTCCTCTAGGTCACATTTACAGCAGCCTCCGTGTGCTGACTGCATTCCTGTTGGCATCCCCAGCAGAATGGCCTGCTAAGCTCTGGTAGTGTCATTCTGTGGCTTCACTTGACTGAGATGCCATACTCTTAACACATTCCTTCCACAAACCAGATTCAATGGTGTAAGAACCACGTGGGCAGGTTGACTCCAGCAGTGATCCCAATCCTCTGCTCCAGTTTTCTGAGTTGGTTACTTTTCTCATTGTGACCAAATCTGTGACAAGAAGCAATTAAGAAATGGAGGGTTCATTTTGAATCATTGTTTGCAGAGATACAGTCCATCCTGTGGGGAAGATGGTGGGGGCAGGAATGTTGGGTGGCTAATCACACTGTACTTACAGTCAGTCAGGAACCAGAAACCGATGAGTGCTTGTGCTCTGTGCTCCCCTCCCCCACCCCACTTTCATTTTTATTCAATCTGCGACCCCAGCCCATACAATCATGCCATCCACATTCAGGGTGATTCTTCCTTGGTTACATCATAGAATTTGTTATATTTATAGATTATGGTATTTGTTAGGGTTCTGTTAGGGTATTTTTGCTACCATCACATTGTGACTCCAAGAGGAATGTTTTTTATAAAATGAAACGTTTGATATTCCTGCAGTTGTAATCCTGTTCAGCAGTTATGAAGGATACAATATAGCCAGAACCACATTAATTTAATCACAACCCTCCTTATGCATTTTTGTTTTCCTGTTTTTATTTATTTTTTTAAATTTATTTTATTAGGCCAAGCAAGGTAGTGAATGCTTTTAATTCCAGCCCTTGGGAAGCAAAGACAGGCATATCTCTCAAATTTGAATCTAGCTTGGGCTACATAGCAAGTTCAAGGCCAGCCTGGGCTGCATAGAGAAACCCTGTCAAAAACAAAACAAAACAAAAAAAAACCCAAAACCAAAACACTAATATTTTATTTTAGTATTTATGTGTATTGTGCGTATGCCTGGGTGAATTTATGTTGTGTGCATTCAGTGCCCATAAAGACCAGAAGATGGAATTGAATCCCCTGGAATTAGAGTCATCATGTGGGTGCTAAAAACAAGACCTGGATCCTCTACAAGAGCAGTCTTACACCACCTATTTGTCTCTTCTATTCCATTTTCCTGTTTTTATAGGATAAAGAGCTCTAAACCAGACGCAATTAGCATAGCAAGGTTTCCATGATGGGCAAGTGGGACTCATACTGCCAAGTCCGTTTCCCACCTTTAGACCCGGCCTTTGAGATTGACATTTTCATCTTTTCACTTTCATTATAATATAGGCCTGCTCAGTTTAGTTAGTGCGAATGGTTACCGAACTCATCTTGGTCAGAAAGTAGAAGCACATATTGTGGTTTTGTAGTTATTGGAAGCAGGATGCTCTGACCACCACAGGCTCACGGGTTTAAGAATCACTTTATTCTGATGATTTGCAGACATGCCATAGATAAAAGATGTACTGAATTTTTGTTTTCACTTTCAG
Seq C2 exon
GTAGCCAGCGAGCTGTGAAATCAGAAGTCACATGCCACTCCCAGTTAAATCCTCTGGAGAGTCGGCATTCCTTTGGACTTGCTGTAGGAGAAAGGGTAGATGCTTCCCTCAGACATGATCAAGGCATCAGTCTTGTAAACGCACAAACACGCTGTGGTGAGGCTGTTGTTTCAGTGGTGCATAGCTCCAGTGAGGCTGCCCAAAGAAAAGTACTCTCAAGTCACAGAACTCTGGCTCTCCCTGGCTTGCAGAGAGTTTCCTCTTGGCAGAGTACCCAGAACTCTTGTCCAGTCTGTAGGGAAAACTCTTGGGAGAAGAATCACTTAGTGAAGCAACAGAAGGGCCACTCAAAGAGCCGGTCATATAGGGTCTGGAAGAAGTTCAGCAGACAGGCTGATGCTAAACAGCCTTGGAGCATCTCATGTCTCGGATGTGGGAAGAGCTTCCGCCTAAAGCAGTACTTGGTGAGACATCTAGATATCCACACAAGGAAGAGACCACCCCAGTGCCCTAAGTGCAAAATGTGCTTCCATCATGAACGTACCCTTTTCAGCCACCACCTGAAGAACAGTTCTTCCCAGCACCCCACATGTGACACGAGCTTCCGGACAGATAGCAGTGTTGACCTGTGCCAGCAGATTCAAGAGAGGCCAGCCTTCTGGAGAGAAGACACCAACGTGCCCTCAAGACAGAAGCCGGGTCCCAGTCTGGACTGTGAGGACTGCTGCCACATGGGTAGCAAGCTGAAGGGCCTGCAGTGTGGCTGCATCCTAGGTGAGGACAGACCCCACTCACACACAGAGTATGGCAATTGCTTCCTCTCACAGTCGAAGCAGGCAGGTCTCTGCAGGACACACACAGGAGAAAAAGCCTCTCAGTGTCCAGAAAGCAACAAGCGCCTCTGCCTGAGAGGCCTACAGAATGTCCACCAACATGGGCTTCGTGGAGAAAAACCAGTCTTCTGTAGAAAGTGTGGTCAAGGATTCACCAAGCATTGCGGACTCACAGAACACACCCGAATCCTCAGCGGGGAGAAATCTTTCTGGTGTGCCCAGTGTGGAAGGAACTTCAGCCAAAAGGGACAGCTGCTGAGGCACCAGCGGCTTCACTTAGAGGAAAAACCCTTCCAATGCACAATGTGTGAGTTGCGCTTCCATCTGAAGAGCAGGTTGAGGGCCCACCAACTACAACATGGTGGAGAAAGGCCATTCTCCTGCAGTGAGTGTGGCCGAGCCTTCACCCATCAGTGCAAGCTCCGTGAGCATCTGCGAGTGCACAGTGGAGAGAGGCCCTTTCAGTGTCCCGAATGCCACAAGAGCTTCCGCCTGAAGGGCGTCCTGAAGGCCCATCAGCGCATCCACAGCAAGGAGAGGCCATTCTCCTGCGGGGAATGTGGCAAGGGCTTTATAAGACAGTCTAAGCTCACAGAGCACTTCCGCGTCCACAGTGGAGAGAGGCCCTTCCAGTGTCCTGAGTGTGACAGGCGCTTTCGCCTAAAGGGGCAGCTGCTTAGCCATCAGCGCCTACACACAGGAGAGAGACCCTTCCAGTGCCCGGAGTGTGGCAAGAGCTACCGTGTGAAGGCTGACATGAAGGCGCACCAGCTGCTGCATGGCGGGCAGATGCCGTTCTCTTGCCAGTGTGGAAAGGGCTTTGCCAAGCAATCTAAACTCGTGGAACACATGAGGACACATACAGGAGAGAAGCCTTTTCAGTGTCCCAAGTGCGACAAGAGCTTCCGATTGAAAGCTCAGCTCCTCAGCCACCAGGGCCTGCACACAGGCGAGAGACCTTTCCACTGCCCTGAATGTGATAAAAACTTCCGGGAAAAGGGTCACATGCTCAGGCACCAGCGCATCCACAGGCCCGAGCGGCCCTTTGCCTGCGGTGACTGTGGAAAGGGCTTCATTTATAAGTCCAAACTGGCTGAGCACATCCGAGTACACACAAAGGCCTGCCAGGTGCCACGTGAACCTGACATTAAGAAAAGGCTTAGCCAACTGTTTGCAATGATAGAGGCTGACTGGAGTTGAGGTGGGTGGGACGGCAGCTCTGGGAGCAAAGCTTAATTGCCAGGGCAGCCTGAAGAACGGTGGCTGAGCCTACTGGGAAGCAGGTTTTAGGAACAGAGGGGCTCTACTTATTCAAAATATAAATTCAAAATGGGGAACTATGAAGAATTTTCTCTTTTGGAATACCGCCAATTATATCCTCTCCCTTGGTAAAAAGAGGTTTTTGTTCTTCCCACCACTTTGGGTGCATTTCACCCAAAAGCAGTTAGTTCACAAGTCCCAGCTTAAACCAGAAGGAAATTCCTCCAGAGCCACTGTCAAAGCTACAAAAGGCAGAGGGAGGGGGTCTAGTTAATATCAGCTCTACTCTTTTGTTCTTTCCAGATTATAATTCGGTTAAATACAGTGAATTTAATTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051499-Zfp786:NM_177882:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: