RnoINT0168655 @ rn6
Intron Retention
Gene
ENSRNOG00000006925 | Zfp786
Description
zinc finger protein 786 [Source:RGD Symbol;Acc:2293500]
Coordinates
chr4:77495663-77502893:-
Coord C1 exon
chr4:77502738-77502893
Coord A exon
chr4:77499587-77502737
Coord C2 exon
chr4:77495663-77499586
Length
3151 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTTTGTTTTTATTTTCAGGTA
3' ss Score
11.89
Exon sequences
Seq C1 exon
ATAATGGACTGCCCAAACCAGAACTAATATCCTGGATGGAACTTGGGAGAGAGAACTTCGGCAGCTGGGGAGAAGGACAGAAAGTAGACAGAGGAATTCGCTGTTCTGTAGATGATGTGTGTGTTCATCGAGTCACTGAGGAACAGTTACCCGAGA
Seq A exon
GTGAGTACTAAGAGCTCATCATCCTAATGGATGGTGCGATGCACACCTGCAGTCTCTGCACTGGGGAGACGCTCAGAGTTATCTTCACTGGCACAGTGAGTTCCAGTCCAGCCTGAACTATATGAGATTCTGTCTCAGAGAGAGAGAAAGACAGAGACATAGAGACAGAGGCAGAGAGAGACACAGAGACAGAGAGAGACAGAGAGAAAGAAGGGGCAGGGAGAAGAGAGAAAAAAGGAGCAAAAAGAAACTATGGTCTTAACCTAAACACATCACATTCAGATTTTTCCCCCTTCTCTGACTTTTTTTCCTATTTCTTCCTGAGGCTTCATGTTACATACATTTTAGAGAAGGGCTGTGAAGCATAGTGATTAGGCACATGAACTCTGAAGCCTGAGTCTGATCTCTCCTTTTCTAGGGGACAGTCATAGTTTCTTTTCTACTGTTGTTTGGGGAGTGGGGAAACTTATGGTTGCAGAGGGTTAGAGTCCATGACCATCATGGCAAGGAATGTGGTACCAGGGCAGGCAAGCCTGGCACTAGAGTAGTAATGGAGACGTTACATCTCAGTCCACAAGCAGAGGTAAAGAGAGCCAACTGGGAATGGTATGGACTTTTGAAATCTCAACGGTCACCACCAGGACACACCTCCTCCAATAAAGCCATACCTCCTAATCCTTGCCAAACAGTTCTACCAACTGGGGACCAAGTATTTAAACATATGAGTCGATGGGGCCATTCTCATTTAAAGCATCACAGTGACTTTGAGCAGAATATTTAAACTCTTGGTGTATACAATGCAGCAAACACAAGAACCTACAACATAGCGTTAGGAAGGAATAATGTATATGGTGCTGAAATGGACACTGATGGAAGCTGTTGTTTGTAATGAATGAGAAAGAACAAAGCTGGGTTTGTGACCAAAGCAGTCTTTCAGCTATGAGCCCCTATGTCGAAAGAGAAGTCAGATCCTACCAATATGCATGGCACAGTATAGTCATTCCTATTCCAAAAATGAGGAATGGGGGTATAGCAAAAAAATAGAGGAGCAAAGCAAGACCATATCTAGCAGGGCAAATGGTAAATCTATCATCTAGGGGTATGAAAGAGTCACCTGGGCTCCATTGGCTTTGAGCATCATCATTTCTCTAGCTCTGCCCCTATAGTTCATATTGACTCTTTCTTGGATCAGCTCTGGCTTCTTCCTGCAATTTTCCATCTCTTACACTTACTTGGGTTTGCACTACAACCTAGAATTTATCTTCCCAGATTCACACCATGATCTTTCAGAGATTCCTTGCAGGAATCTGGCCCTGCCACACATTGCCTAACCTCAGAAGCTGTGTAGAACTGTGCCGCAAGCCTTCATGACCCCTCTTGTATCATTCATGCTGGTAGAAACCATTACTACATGAATAACACTGCCAAGCTCCGTTGCCAACTTTGAGATGTAGCTAGTCTCCTCTAGATCACATTTACGACAGCCTCTGTGTGCTGACTGTATTTTTGTTGGCATTTTGGTCTTCCAGACTCTCAGCAGAATGGCCTGCTAAGCTCTGGTAATGTCATTCTGTGACTTCACTTGTCTGAAATGCAATACTCTTACACATTCCTTCCATAAACCAGTTTCAGTGGCCTAAGAGCCATGTGCTCAGGTTACTCCAGCAGTGATAGCAGTCCTTGGTTCCAGTTTTCTGTATTAGTTACTTTTCTCGTTGTGACGAAATCCATGACAAGAAGCAACTTAAGAGATAGAGGGTTTATTTTGACTCACTATTTGCAAGATGCAGTCCATCGTGTTGGGAAGACCATGGTGGCAAGAATGTTGGATGGCTGACCGCATTGTATTTACAGTCAGGATGCAGAGACAGGTGAATGCTTGTGCTCGGTGTTTTCTCCCCATACTCCCCACTTTCATTTATACAGTCTGGGACCCCTCCCATAAAATCATGCCATCCACATTCAGGGTGACTCTTCCTTGGTCAAGTCATAAAATTTGTTATATTGGTAGATTATGGTATTTGTTAGGGCTCTGTTAGGATATTTTTGCTACCCTCACATTGTGACTCTAAGGAGACTGTTTTATAAAATGGAACATTTATATTCCTGCAGTCGTAATGCTGTTCAGCAGTTATGGAGGATACAATACGGCTGGTACCACATTAATTTATTCACAACCCTCTTTATGCATTTTTGTTTTCCTGTTTTTATTTTTAAAATTTATTTTATTAGGCCAAGCATGGTAGTGTATGGTTTTAATTCCAGCCCTTGGGAAGCAGAGACAGGCAGATCTCTCGAATTTGAATCTACCCGGGCTACTTATCGAGTTCCAGGCTAGCCTGGGTTACATAGAGAAACCCTGTCTCAAAAGAAAAAAAACAAACCACTAACAGTTTATTTTAGTAGTTGTGTATGTGGTGTGTATGCCTGAGTGACTTTATATCCTCTTTGTACATTCAGTGCCTGAAAAAACCAGGAGATGGAGTTGAATCCCCTGGAATTAGAGCCATCACGTGGGTGCCAAAAAACAGAACCTGGGTCCTCTACAAGAGCAGTCAGTACTCTTAAACCACCTATCTCTTCTGCCCGATTTCCCGCTCTTTACAGGATAAAGAGCCCTAAACCAGAAGCAATTAGCGTGGCAAGTTTTCCACTGTGGCCAAGTGGGACTCATACCTGAGAAGTCCGTTTCTAGCCATTAGACCCCATCTTCGAGACTGACGTTTTCTTTTTTTTTTTTTTTTTTTTTTTAAATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCGTTTTCATCTTTTTTTACTTTTATTATAACATATACCTGCTCAGTTTAGTTTATGCAAATGGTTACCAAACTCACTTTGGTCAGAAAGCTGGAGCACATATTGTGGTTTTGTAGTGATTGGGAACCGAATGCTCTGACCACCACAGGTTGACTGGTTTATGAATCACTTTACTGATGATGATTTTCAGTCATGCCCTACATAAAAGATTTACTGAATTTTTGTTTTTATTTTCAG
Seq C2 exon
GTAGCCAGCAAGCTGTGAAGTCAAGAGAAGTCACATGCCATTTCCCATTTCCCATACATCCTCTGGAGAGTCAGCATTCCTTAGGACTTGCTTTAGGAGAAAGGGAAGATGTTTCCCTCAGACCTGATCAAGGCATCAGTCTTGTAAACGCACAAACCCAACATGGTGAGGCTTTGGTTTCAGTGCAGAGCTCCAGTGAGGCTGCCCAAAGAAAAGTGCTCTCAAGTCACAAAACTCTGGTTCTCCCTGGCTTGCAGAAAGTTTCCTCTTGGCAGAGTACCCAGCACTCTTGTTCGGTCTGTGGGGAAAACTCTTGGGAGAAGAATCACTTAGTGAAGCAACAAAAGGGCCACTCCAAGAGCCTGTCATGTAGGGTCTGGAAGAAGTTCAGCAGACAGGCTGATGCTAAACAGCAGCGGGACGTCTCATGTCCTGAATGTGGGAAGAGCTTCTGCCTGAAGCAGTCCTTGGTGAGACATCTAGATCTCCATCTAAGGAAGAGACCACCCCAGTGCCCTAAGTGCAAAATGTGCTTCCATCATGAGCATCTCCTTTGTAGCCACCACCTCAAGCAAGTCTCTTCTCAGCACCCCAAATGTGACACGAGCTTCCCAATAGATAGCAATGTTCACCCGTGCGAGCAGGTTCAAGAAAGGCCAGCCTTCTGGAAAGAAGACACCAGTGTGCCTTCAAGACAGAAGCCAGGCCCCAGTCTAGACTCTGAGGACTGCTGCCACACTGGTAGCAAGCTGAAGTACCTGCAGTGTGACTGCATCCTAGGTGAAGACAGACCCTGCTCGTGCTCAGAGTGTGGCAGTTGCTTCCTCTCACAGTCTAAGCAGGCAGGTCTCTGCAGGGAACACCCAGGAGAAAAATCCTTGCAGTGTCCAGAAAGCAACAAGTGCCTCTGCCTGAGAGGCTTACAGAATGTCCACCAACATGTGCATAGTAGAGAAAGACCATTCTGCTGTAGAAAATGTAATCAGGGATTCACCAGACATTGCAGACTCACAGAACACACCCGAATCCTCAGCGGGGAGAAATCTTTCTGGTGTGCCCAATGTGGAAAGAACTTTAGCCAAAAGGCACAGCTGCTGAAGCACCAGCGGCTTCACACAGAGGAAAAACCCTTTCAATGCACACTGTGTGAGCTGCGCTTTCATTTGAAGAGCAGGTTGAGGGCCCACCAACTACAACATGGTGGAGCAAGGCCCTTCTCCTGCAGCGAGTGTGGCCGAGCCTTCGCCTATCAGTGTAAGCTCCGGGAGCATCTGAGCGTGCACAGTGGAGAGAGGCCCTTTCAGTGTCCTGAGTGCCACAAGAGTTTCCGCCTGAAGGGCATCCTGAAGGCCCACCAACGCACCCACAGCAAGGAGAGGCCATTCTCTTGCGGGGAATGTGGCAAGGGCTTTACAAGACAATCTAAGCTCACAGAGCACTTCCGTGTCCACAGTGGAGAGAGGCCCTTCCAGTGTCCTGAGTGTGACAGGAGCTTTCGCCTAAAGGGGCAGCTGCTTAGCCATCAGCGCCTACACACAGGAGAAAGACCCTTCCAGTGTCCAGAGTGTGGCAAGAGCTATCGTGTGAAGGCCGACATGAAGATGCACCAGCTGCTGCACAGCGGACAGATGCCGTTCTCCTGCCAGTGTGGGAAGGGCTTTGCCAAACAGTCTAAACTCGTGGAACACATGAGGACACATACAGGAGAGAAGCCTTTTCAGTGTCCCAAGTGTGACAAGAGCTTCCGATTGAAGGCTCAGCTGCTCAGCCACCAGGGCCTGCACACAGGCGAGAGACCTTTCCACTGCCCTGAATGTGATAAAAACTTCCGGGAAAGGGGTCACATGCTCAGGCACCAGCGTATCCACAGGCCTGAGAGGCCCTTTGCCTGCAGTGACTGTGGGAAGGGCTTCATTTATAAGTCCAAACTGGCTGAGCACATCCGAGTACACACAAAATCCTGTCAGGTTCCAAGTGAGCCTGAAGTTAAGAAAAGGCTTAGCCAACTGTTTGCAATGATAGAGGCTGACTGGAGTTGAGGTAGGCGGGGTTGTCAGCTCTAGGACCAAAGTTTAATTGCCGGGGCAGCCTGAAGAATGGTGGCTAAGCCTAGTGGGAAACACTAGGAACAGGGGCTTTTAAATTTATATTTTGGATGGGTAGGGCCTTCAGGATGCCCCCCCCCCTTTTTTTTGAATACCACCAATTATATTTCCTCCTCCTTGGTAAAAAGTGATATTTGTTTTTCTTATTACTTTAAGTGCATTTCACCCAAATGCAGTTAATTCAAGAAGTCCCATCTTAAGCCAGAAAGAAGTTCCTCCAGTACCACTGTCAAAGTTACAAAGGGGCGGGAGGTCTATTTAATATCAGCTCTACTCTTTCATTCTTTCCAGAGTGAAATACAGTGAATTTTATTTCTCTTGTGATATGCTTTTGAGTTTGCTATTGATTCATTTATTTTGAAACTGGTAAGATGAATTCTCTGAATTTTATGTGACTGTTGAAATTTCTCCTCGGGGTTCTTGATGATTAATGTGTAGCATGCTTTTAAAATGATGATAATCACGGGGGTTGGAGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCCCAACTCCGAAAAAAAAAAAAGAAAAAAGAAAAAAAAATGATAATCTGAGTTGTGGAAACAAAAAACCAAAGTTGAGAGGTCTGGATGCAGATCAGGGGCTGAATCAGTGGCTAGATTTGGGAGTTCTGGCGTGGAGATGCTATTTGAAGCAGAAGAAAGACTCTCAAGGAATAAATATTTAAGCAACTGACTAGAGGATAGGCAAAGCATAAAACAGAGGTATCACAATATGCAAATTACTTATATTCTCACATCTTGTAGAACTATAGAGATCAGAAAGGATTTTTTAAAATTTATATTTTAAACTCTATTGTTACATAAAGTGTCCCCTCAGCCTCAGACCCAGTGGGTTACTGTGTCAAGGTTCCCCCATGTTGAAGTCCCCCCCTCTCACCTACCAACCAGTTCTCACTATATAGTCTTGCTTGGCTTGAAGTTCACTATGTAGACCAACCTGGCCTCCACTCAGATACCCACTGCCTCTGTCCCCCAAGTAAGGAAACACAACTCCCTGAGACTTTCTGTAGGCCTCCCTCCCGGACAGGGATTCTTGTACTGCACTTAATTGGAAATCTAGAAACCATGTCATGGTCTGTATGCAGGAAAAACCTCAAACCAAACCTAACTCCACTTGACAGAGCCAAGTCTCAACCTTTTAAGTTTCTTTGTTATTAAATGCCAGAGTATTCTAAGGATTTAGTATTGTTACTAAAAATCAAACACTATTAGAATTTGTAGAAATGAAACATTGAAATATAAACTCCAACATATTTTTATATTAAAAACAAGAAAATTATGAAAATTTAAATCTGCTTTCGAGTCAGACTGCATGACACTGACTTTAGCAATTATGTGCCCACAGAGGCCAGAGGAGAGTGTGTCCTATGCTCTGGATCTGGAGTTATGGACTGTTTCAAGTTGTCATGTGGGTCCTAGGACTCAAACCTAGGTCTTCTCAAGAGCAGCAAGTATTCTTGACCTGTGAGCCATCTCTCCAGCCTTCTTTGTTGGTTTCATATTTACTTCTTCATCTGTAGTGTTTGTGTATGGGGGGACAGTGCCTGTGCCATGGTGCTTGTATAGAGGTTAGAGGACTACTGGTGTTGGCCTTCTCTTTCTACCTTTGTTGTCTCTGTTCTGTGCACTCCAGATGAGTAGGCCTGTGAACTTTAGGGGGATTAACCTGCCTCTGCCTCATACCTCACAGAGGAAATGCTAGGATTGCAGATATGCACCACGGTGTCCAGCTTTTTATTTTTAAATTATTTATTTAATTATATGTATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006925:ENSRNOT00000038550:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]