HsaINT0188399 @ hg19
Intron Retention
Gene
ENSG00000197362 | ZNF786
Description
zinc finger protein 786 [Source:HGNC Symbol;Acc:21806]
Coordinates
chr7:148766733-148771630:-
Coord C1 exon
chr7:148771478-148771630
Coord A exon
chr7:148769566-148771477
Coord C2 exon
chr7:148766733-148769565
Length
1912 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ATTTTTGTTTTCAATTGCAGGAA
3' ss Score
11.6
Exon sequences
Seq C1 exon
ATGATGGACTTCCAAAACCAGAACTAATATCCTGGATTGAACACGGGGGAGAGCCCTTCAGGAAATGGAGAGAATCACAGAAATCAGGAAACATAATTTGCTCCTCTGTTGATATGCATTTTGATCCAGGTTTTGAGGAACAGCTGTTTTGGG
Seq A exon
GTGAGTATTAAGAAATCAGGGCCCCGACCTTGAGACATCATGTTCAGATTTGTTTCTCTTCTCTGATCTTGTCATCCTGTTTGGGCAAGCTGAGGTTTGAAGACTCTTATCTTCTAGATAAAGGCAGTAAAGCATAATGGTTAGGAATGTGGGTTCTAGAGTCTGTGTCTGGATCTTGCTTTTTCTTGGTGACCTTGGGCAAGTTATTGAACCTTTTGGTATTTCAATGCCTGATCTATAAAATGAAAGTACCCATGTTAACAGGATTGAATTGGTTAATATATATAGTGTTAGGCCAGGCATGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGTGGCCGAGGCGGGCAGATCACTTGAGGTCAGAAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCTTACTCTACTAAAAATACAAAAAAATTAGCCGGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGGAGAAGAATTGCTTGAACCTGGGAGGCAGAGCTTGCAGTGAATGAGCTGAGATTATGCAACTGCACTCCAGCCTGGGCGATGGAGCAAGTCTCAGTCTCAAAAAAAAAACTATATATATATACATATATATATATATATATATATATATATATATACACACACACACACACACACACACGCACACATATACACACACACGTGTATATACATATGTATATAAATGTATACATAAATATATGTGTATATATGTATACATATATATGTGTATATATATTGAGAGACAGTTTATATAGTAAGAACTCAGTAGAAACTGGTTATCCAGTTTGTTTGGTTTTTAAGACACAGGATCTTGCTCTGTCACCCAGGCTGGAGCACAGTAGCATGATCATAGCTCACTGCAGTCTTGAACTCCTGGCTTCCAGCAGTCCTGGCCTCAAGCAGTCCTCCCACCTCAGCCTCCCAAAGTGTTGGGATTATAGGTGTGAGCCACCATGCCTGGCCCATGGTTATCCAGATCTTCATGACTAACGTGGCTTCCTTCCTAACTAGAGACTGTTGTCTACTTGAATACTTCAACCTGAGCTCCTCTCTTTCATTTCTTGTCATGAGGAGAGAGTCTGAGATTTTTGGATTCTTAAAGTACAGAATGAAAAAGTCAAACAGGAGCATCATTTCAAGAAATCTTGTCAAATAGTTTTTGTTTTTAGGTGCTTCTTTCGAAAGTGAAGGTTTTTCCCCCACAAATTACTTAACTTTCTACCATCTATTAATTATTCCAAGAAACCTTCTTGAAACATTGGCAGAAATGGGGGCAGGGAGGGAGGAATAGGCCCAAGCCTTGCTGCCAGGTCTTAGAGACAGGATGGCTCAAGGATCACGTATAACTGTGGTATTGGTCAGGGCTCCAGCTCGGGACTCCAGGTGTGTCTGTACATCAGAATGCGATACACTGGCTTTCCTGAAGTCATGAGAACAGCCAACACTTAAACAGAGTACATGCACTATGCCAGGCACCATGCTAAGCACCTCATGCACATTAGCTCATTTAATTCTCACAGTAATCTTATGTACTTTTGTTTCCATGTTTTTACAGAAGGAGCTGAAGTCAAAAGAGATTAGCTTGACAAAGGTTACACAGTGGACAGATAGGATTCAAAACTAGGCAGACTGATTCCAGAGCTTACACTCTATATTTGCGACCTATATTTTCCTTTTTTCAATATTATCCAAAGATATGTCTGTTCAGTTTAGTTTCAGCAGACTCACCAAACTCACGGCCATGAGACAGATCACACTGCATGGTTGGGTAGCTCAGTGGAAGCTGGGTTCCCAGGCCACCACAAGGCACTCTTGTGGGTCACTTGACTGTGAGAATCGCTAGTAGTGCTGCAGACAGGAATACCGACTGAATTTTTGTTTTCAATTGCAG
Seq C2 exon
GAAGCCAGCAGGCTATGAATTCAGGAAAAACTAAAAGCCATTTCCAATTAGATCCTGAAAGCCAGTGTTCCTTTGGATCCTTTGTTTCCTTCAGGCCTGACCAAGGCATCACCCTCGGGAGCCCACAGAGACACGACGCCAGGGCTCCTCCACCACTAGCCTGCGGCCCCAGTGAATCTACCCTAAAAGAAGGAATCCCAGGTCCCAGAAATCTGGATCTTCCTGGTTTGTGGGACGTCCCCGCCTGGGAGAGCACCCAGCACCCTTGGCCTGTCTGCGGGGAAAGCTGTTGGGAGAACAACCATTTAGTAATGCACCAGAGAGGCCACTCAAAGGACCGGACACGTAGGGCCTGGGAGAAATTCAACAAGAGGGCGGAGACGCAGATGCCGTGGAGCAGCCCTCGGGTACAGAGGCACTTCCGGTGTGGCGTGTGCGGTAAGAGCTTCCGCCGGAAGCTGTGTCTGCTGCGCCATCTGGCGGCCCACACGGGGAGGGGCCCCTTCCGGAACGCTGACGGTGAAATGTGCTTCCGACACGAGCTGACCCATCCCAGCCACCGCCTCCCGCAGCAGGGGGAGAAGCCTGCCCAGTGCACCCCATGCGGCAAGCGCTCCCTCCCAGTGGACAGCACGCAGGCTCGCCGGTGCCAGCACAGCCGGGAGGGGCCGGCCTCTTGGAGAGAAGGCCGCGGGGCCTCCAGCAGTGTGCACTCGGGACAGAAACCAGGCTCGCGCCTGCCCCAGGAGGGGAACAGCCACCAGGAAGGGGACACGGAGGCGCTGCAGCATGGCGCAGAGGGGCCCTGCTCCTGCTCGGAGTGTGGCGAGCGCTCCCCTATGAGCGCCAGGCTCGCCAGCCCCTGCAGGGCGCATACTGGAGAAAAGCCCTTCCAGTGTGCGCATTGCACCAAGCGCTTCCGCCTGCGCCGCCTGCTGCAGGTCCACCAGCACGCGCACGGTGGGGAGAGACCGTTCTCCTGCAGGAAGTGTGGCAAGGGCTTCGCCAAGCAGTGTAAACTCACGGAGCACATTCGAGTCCACAGCGGAGAGAAGCCTTTCCGGTGTGCCAAGTGTGGCAGGAACTTCCGTCAGAGGGGACAGCTGCTGCGGCACCAGCGGCTGCACACGGACGAGAAGCCCTTTCAGTGCCCAGAGTGTGGGCTGAGCTTCCGCCTGGAGAGCATGCTGAGAGCCCACCGGCTCCGGCACGGTGGGGAGAGGCCGTTCTCCTGTAGCGAGTGTGGCAGAGGCTTCACCCACCAGTGCAAGCTCCGTGAGCACCTGAGAGTGCACAGCGGGGAGAGGCCCTTCCAGTGCCTGAAGTGCGACAAGCGCTTCCGCCTGAAGGGCATCCTGAAGGCCCACCAGCACACGCACAGCAAGGAGAGGCCGTTCTCGTGCGGGGAGTGTGGCAAGGGCTTCACCAGACAATCCAAGCTCACGGAGCACTTGCGCGTGCACAGCGGGGAGAGACCCTTCCAGTGCCCAGAGTGCAACAGGAGCTTCCGCCTGAAGGGGCAGCTGCTCAGCCATCAGCGCCTGCACACGGGAGAGAGGCCCTTCCAGTGTCCGGAGTGCGACAAGCGCTATCGCGTGAAGGCCGACATGAAGGCCCACCAGCTGCTGCACAGCGGGGAGATGCCTTTCTCCTGTGAGTGCGGCAAGGGCTTTGTGAAACACTCAAAGCTCATCGAGCACATCAGAACGCACACGGGAGAGAAGCCTTTTCAGTGTCCCAAGTGTGACAAGAGTTTCCGCCTGAAGGCGCAGCTGCTCAGCCATCAGGGCCTGCACACAGGGGAGAGGCCTTTTCACTGCCCTGAGTGTGACAAGAACTTCCGGGAAAGGGGACACATGCTGAGGCACCAGCGCATCCACAGGCCCGAGAGGCCCTTTGCCTGTGGCGATTGTGGGAAGGGCTTCATTTACAAGTCTAAGCTTGCGGAGCACATCAGAGTACACACAAAATCCTGTCCTGCTCCAAATGAACTGGACATTAAGAAAAGGCTCAGCCAACTGTTTGCAATGATAGAGGCCGATTGGAGTTGAGGCAGAGTGGGACATCCAAAGCGTTGAGCAGGATTGGTATTGCCCAGGAATCCACAGCAACAGTAGCCAGACCCGCTGGTAGACGGGTTTTAGGAGCAGGTATCCTTCTTTGAGCAAGAGTGTCATGCAAGTTAGGAATATGAAGAACCACAAAGGATTTTCTCTTCAGAAGCATCACCAATTATATTTCTTTCTTTTTTTTTTTTTTTTCCAAGATGGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCCCAGCTATATTGGAAAAGACAGCATTATAAAACAAGGACATAATTTTATGAAAAAGGAGGCATCTGCAAACGAAAACAATTTCTACGAGGTTATATGTGATTGTTAACATTTTTAAGAAAAGGTGCACACAGAAATCCAGATAAGATGTGATTACCTTTGTGCATTTGTATAAAAATATATGTGTGTAATTATAAGGAAGTTCTGACATTTTAAAAAGTAATTGTTATAAAAGTAAATTTAGGCCAGGCACAGTGGTTCATGCCTGTAATCCCAGCACTTGGGAGGCCGTGGCAGGAGGATCACGAGCCAAGGAGTTTGAGACCAGCTTGGGCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTACACACCAGTAGTCCCAGCTACTCCTGAAGCTGAGGTGGGAGGATCGCCTGAGCCCAGGGAGGTCAAGGCTGCAGTGAGCAATGATGGTGCCACTGCACTCCAGTATGGATGACATAGTATGACACTGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197362-ZNF786:NM_152411:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF138941=zf-C2H2_4=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCCCTTCAGGAAATGG
R:
GACGTCCCACAAACCAGGAAG
Band lengths:
345-2257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)