BtaINT0166100 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002904 | ZNF787
Description
Bos taurus zinc finger protein 787 (ZNF787), mRNA. [Source:RefSeq mRNA;Acc:NM_001206139]
Coordinates
chr18:63687553-63695160:-
Coord C1 exon
chr18:63695082-63695160
Coord A exon
chr18:63688629-63695081
Coord C2 exon
chr18:63687553-63688628
Length
6453 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTCCCCGCTTCCTTGCAGTGG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGGAGCTGCGGGAAGAGGCCTGGTCTCCGGGGCCGCTGGACTCCGAGGACCAGCAGATGGCTAGTCACGAGAACCCAG
Seq A exon
GTGAGGGGCCCTGGGCTTCTCCCGGCTGACCTCGCGCCCTGCCCGCTTCCTGGAGGCTCGGGGTCCTACCCCGCCTCCCAGGCCCAGCCAGCCGCCTCCCGGGCCTGGTGGGGTCTCCGTGGCCCCCCAGCTGGGAGCCTTTGGGGGCAGCCCCCTCGGCTGCCGCGGGTGGGGGCTCCTCAGCCTGGGGAGGGCCCGGGGGCTGGGGGCCAGGAGGACACAGGGCGTCCGGGTGGGCCTGGGTCCTCCCGGGTTTTCATCTTCATTTAAGACATGGGCAGCCTGCCTTATTTAATAAAGCGTTACCTGGCTTGAGTAACCTCCTCTGTGAGCCCCCGGGGATGAGGCTTCGCGTGCTGAGGCTGGGCCACAGCCTCGCCAGCCCCCACCCTCAGGGGGAGCCGTGGCCCATCTCCCCGGCCCCGGGCTTCCGTGCAGGGCGCCTGTGAAATAAAGTGTGAAGCGCTCTGTGCTGCTGTTGATGCGTCTTCGTGCGTCCCGGCCGGCGTCCATGACCTCTCACTGTGAGGGCTCTAGGCCTGGGGGAACAGACCCTGCCCTACAGGGAGGGCCCAGGCCCTCCTTCACCACGGCGCCCCCCCTCCCTGTTTTTTTACCGCTTTAAAGTAAGATTAACCTTACAGTTGGTTTCCTTCTGGAAACTTCCAGCCCGACAGTGTGGTGGCCGCACGTCACGCTGCCTGGCCCCAGCAGTGAACCACACTGGGTGGGCCTACACTGCCTGTGCCCGTTTCTTGGAGGATTTCAAAAAGCATCCCCACGTGTTGCAGCGGCTCACCCATAAATTCTCCGCGAGCAGCAAACGCTCATCTCAGCTGACGGACTCAGCGTTTCCCCTGACTGTCCTCTGCCCCCAGCCGCCTCCGGAAGGCGGTTTACCTCGGAGCCCAGAGTTCTGACTGTGCACGCTGTCCACTCAGGCGCTCTCCTGGGCAGACCTTGAAGGGCAGGTGGGCTCTCACCTCTGTTCTGCCCAGTGGTCTGCTCGGGCCCCCACCCTGTGACCCCCTGCGCGCTTCCCAGCTGCTCTGCTCCCCCTTGTCGGCACCCCTGTGGGCCCCTCCCGTGAGGGGCAGTGTGGGACCCCTGCCCTGAGACCGCTGGTGCTGTCTGGTGCGGTGGGGAGGGCCGAGGGGCCCCGGGGGCAGGGCTGTGAGCCCGGGGCATGGGACGGTGGGGCCACCAGGAGCCAGGGCTGGGGCTGGGCTGGACTCTCTGCAGGCTGCAGCCAGGTCTGTGCTGACCACCTCACGGGCGCACTGACCGCGCACGCCCCCCCCAGACCCCGGGGGAGGGGGGGAGCCGGCAGGGGTGCGGTGTGAGAGCTGGCCAGGTCTTCCACGTGGGCACTCAGAGAGAGGTCCTCTGAACACGGATCGTAGGTGAAGAGAAGGCCTGACTGAGGCGGGGAGGAGTCTTCAGCCAGTGGGTTGGAGATAACCCTCCAGGGCCAGGGTCCCAGCCTCACACGGTCAGGCCCGCCTCTCCTATCTCAGTGCCACTAGCATCACCCCGCAGAGTCCCCTGAAATGCTCTGCCTGAGCTGGGGCAACAGCAGACCCCGCGTGAAAAGACAGCAACCTCACCCAGGCAAGACCCACGTGCCCTGGCACAGCCCCAAGCACAGGGGGATGGGGACGAGCCAATGGCCCTCGTGGTGTTAGGGGGCGGGGAGCTGGCCACCAGGCTGCCCTCGGGGGTCACTGTGGGCAGCAGCCGCAGCGGGTGTTCCATGCAGAGCAGCAGCGGGGTGCACAGACTGCCTGGGCCCGCGGCTTCCTGTGTCCAGGGAAAGCACCCGCCATGGAGGCCCCAGGCAGGGCAGGGTCTGCACGGAGGGGCTTCAGGGTCCAGTGGGGACTGCAGTGGGGAGGGGAAGGTACTGACCAAATGGGGTGGCGGCAGAGCGAGGGTCCCTGGGAGAGCAGGTCACACACGCGGCAGAGGACCCTCGAGGAGCTGAAAACACTGCCCAGAATGTAGCCGCCTGTGAATTCAGGGAAGTGGACGTCCAGAGATGGGCAGACAGGGAACTAAAGTTCTGTTCTGCTGACCCCACCCCGCAGGAGCTACTAGAATAAGAGAAAGGGGCCGAGGAGGGTGTCCTCAGATGCGGAGGCTGCGGTGTGTCAGAGGTGCACAACCAGACAGGCGGGACTGTGCGGAGGGGCTTGGAAGAACAAGACCAGGACCGCGCGGCCCAGGGACAGAGCTCAGCAGACAGCCAGAAACACAGACAAAGCCATTTCAAGACAAAGATGGAGCAGCTGAAGACCAAGTAAAAGTAGTGAGTGCATCGTTCCCTGAGAAAACCTGAAGGTGAAAAGGAGGAAGGTTGTAAAATCAAAAAGAAATAAAGATTACAGCAGGGTTTAAAAAAAAAAAAAAAGGTACTGAAGTTAGTTAAAGAAAGCCCCAAGAAGACAAAACCCTGTATAAGGAAGAGAACAGTGAAACCTACGCGTCTAGAAAACATTCCTGAAATGGAAAAGTTGGGTGTCGAAAGAGCAAGTCGAAACTCTGAGAACATCCGCTCGGATGGATGGTCTTTGAATCAAGTCGCTGGGCTTGAAGAAGCAGATCCCCCCGGGTACCTGGGGAAAGAGCGAAGGGCCCCAGGCAGAGGAGACGGCATTGCGCTCAGCCAGTCAGTGGCGCCTTCTGCCAGGGCAAAGTGGAGGGCTCCTGTTTCTGATTGTTGGGGGAAGGAAAGGGAGGCCGCGGGTCACATCGTATGGAGAAGCGACCTGCACATTGGAAGGGCGGAGCCAAGCAGACCGGCTCCGCGTGGGCCCTTCCTGGAGATCCGCGGGCAGGGAGCGGGGCCAGGCTGGCTGTGAGGTGGGCGCCCGAGTCCTGAGGAACCTCGCTTGGCCGTGCCGGTGTGCGCACCGCCATCCCGATGCTGGTGCTGTGGTGTCAGCAGCCTGGCACAGACGGCGCCTCTGGGTTCTCTCCTCGCCTTGTGAGGACTGGGGATGCGGGCGTCTAAGGAAGACCGCAGAGAAGCCTACTGGCCTGGATCTGTATGGAAAGTGTCAGTTAGAGCTTACAGGAATTTTACCTTAAAAAAAAAAAAAAGCAGTGATCACTTCCAGATTTGGAGCTTGAAATTGTTTCCTGCTCAGAGAAACCAGAGCGCCCTTGTAGATTGGCCGGCTGCAGGTCTGGGGAAGAAAGTGTGGGTGAGCCTGTGGTGGCAGAGGAGCTGTCAAAGGACCCCGTAGGTCCCATCCGGAGGACTCGGAGCCCCTTCAAGGCTCCCACGCACCACAGCTGGCGGGGTGACAGGCGAGGGGTGCAGCCCACCAGATGTGTGTAAATCCGTGGACTCAGAGTGCAGTGAGGAAAGGGAAGGTTACTTGGTCATGCTGGAGGACAACGGAAGACCGGGCAGATGAAGGAAAATGAGGTTCATTCCGCCGTAAACCCGTGAAATTGACCACTGGGTCCCAACCAGCGGGCGAGGGAGCTTCTCAAAACTACTCCACCTACTAAACGTAATGTGGAGCTGACCACAATCAATGCAGGACAAATGCCCTGTCACGACGGGGGCGGGGCCCCTCTGTGCCCGCTGCGTGCAGGGGCCGCGCCGTGCATCCCTCCATGATTCCGTAGATGTCTGAGTTCCTGCGTGTCAGTGGCCCTTGATGTCACAGAAACGATACGCCATCACACGAGAGACGATAATCCATGCTTTTAGTGAGAGAACGGGATTGCACCTTCAGAATGACTGACCACAGAACCGGCGGGGCTGGGCCCCCAGCAGCCCACGAGGAGGAGCTGGCAGCCCGCGAGGGTCCAGAGGGCCGCAGGGCTCCGTGAAAAGAAGATTGTCAGGAAAAGCAAGAGACCGGCGAAGCTGTGTATTACACAGGACCTAAAAGACTTAGATGAAGTCAAAAGTAAAGGGACCGAACTCATGTCTGGGGATGTGCACTTGGGTGATGGCGTGCAGGAACGCGAGGGGGCGGCTCTTGCACGGCTCTTTGGGCTTGGGGTGGGGGAGGGTGTGTGGGACCGGGCACGGAGGGGCTCCGGTAGGGAGGGCGGACCGGGGGCAGCCGCTGACCATCTTCCTGACCTGGACGGGGTGCAGAGTCGGACTCGGGGGTGCACGAGAGCGCGGGGCCCTGCACCCACTGCAGGAGACCAGAGGTCCGCTGGTTGAGGGGCAGGCCCTACTCCCGGAGTGAGTAGACACTCCTCCACTGGGCCGTTTTAACACCTGCTCGAAAAGCAGTGCCTGTGGTGAAGGCGGCGCAGTGCCGCCCCCGGCTCAGCCCCACTATCAGCCCAGCCCTGCGGCGCACCCCCCCCCCGCCCCCGCCCCGAGCTTTCTCTCCTGTTTCCGGACCGGCGCTCCGCCCCTCGCCCCCCACCCGCATCCAGGACTGCTGGTTGAGTCCCAGGGGTCTCACAGGTTCAGGTGGGCTATGTTATGTCCGGGTCCTTGCGATGGCAAATGCGCGTCATCGCCGAGTCATGTCTCTGTTGTTAAACTTTAGGGACAACTTGGAAAGCAGAGCGTGTACTTCGGCCTTCCGCCAATAGCAAGCCTACTTCCTATCCCCTCCCTTCCCCACGCCTTAGGACGTCGTGTGCTTAAGACTTTCTCCTCTTTATCTCCCTTGGCCGCGCTGCGTGGCTTGCTGGATCGCAGGGCCCCGATCAGGGTGGGACTGGGGCCCGCGAGGCAGTGGAGTCCTAACGGTGGCCGCCCCGGAGTTCCCGATTTATGTTGACGTCAAAGTGGAGTGGGCCCCAGGCCATCTCTTCGGAAGCGCCTCCCACCCCGCCCAGGCTTCCTACCGAAGTGATGTCCTGTCCCAGCTCAGGCCCTGTTCCGGTACTCCTCGCGTGGAGCCCTGGTTCTCAAAGCGTCGGTGCTCAGTCACCGGGGGTGGCGCGTGGGGCATCGTCTCCCAGCGCTGCCGGAGCTCAGGGCGGCCACCTGGGATCCGGACTGCGGGCCCCTGGTGCTTCTCCGCCCCCAGGCCGTGTCGCCGCGGGAGGCGGCTCATCTGGCTGGCCCCTCGGTGTCCTCGCTGCGAAGGCCCGAGTCCCCAGCGCCCACCTCGCGGGTCTTAACGCACAGATGCTTACCGAGTGCACGAGGACGTTATCTCGAGGACAGTGTTGGGGCACTTTGTCCCAGGCCGGGTGCTGGAACACGGTCCGACCGCTGGCCCTGTGGGCCTGCAGGCTAGTGAGAGGGGGCGGGAAAACAGAGCTAGGTAGGTTATGGTGGGGTTCACCTTTGAGCGACGCCTTCGCGTGGCACCTGGGGGCGGGGCCGGAGGCTGGTGGGCGGGGTTATTTCCGGGGCGGAACCGAAGCTTGGTGGGCGGAGCTGTGTCCGCGGCCCAGGCCGGAGGCTGGTGGGCGGGGCTATGCCGGGGCGAGGCTGGGTCCGTGTGGGCGGGGCTGTGCCCAAGGGTGGAGCCGGAGACTGGTGGGCGGGGCCGTGGGGGGGCGAGGCCACGCCCAGGAGGTGGAGCCGGAGGATGGTGGGCGGGGCTGGGCCCGAGCTCTGGCCCCTGGCAGGTGTCTGAGCTGGAGCCCCCTAAATCCGTCTCCATTCTGTAGCTCAGGCCCGAGTCGCACAGGGAAGGCAGATGTCGCCGAGGGTGCACCCAGATCTCGTGGAGCCGCTCATCTCTCCCGGGAGGCCGCCCGGGCGAGGGGCGGTGTAAATGTATTAAGGCTTTGTCGGGCAGTCGGCCCGCGGAGGTGTCCGAGGTGGTGTCCTCGGTTCGCAGGCGCCGGGAACGAGGCCCCGCGCTCCTTTCTTGTCTCCACTGGGCACACAGGGCCCACAGAACCAGGGCCCAGGCTGAGGACGTCTGTGATAGAGGTTGCGGGGTGTGGGGTTGCACCCCCAGTTAGTGGGGGGGGGGTAGTCAGGGCTCTCCTGCTGTGCTCTCATTAACCAGTCCGACCCCCGCAGCCACGGTCGTCTTCCCAGAACCCAAATGTGACACCGTCCTTTCCCGGGCCGAGATGAGAGCCGCCTGGTGCTAGGGTCTCCTGCCTCAGGGGTCATTCTGTACTAGGGCCTTACCTAGCCCTCCACGCGCAGCCCCGTTCGATTCTGTTGATTCCTTTAGCAGACATTTCTGGAATCCCCACCAAGTCCCGGGCATTGTTCTGGGTGTGGGGGAAACGGCTGTGAAGGAAGGCGAAGCCCTAGGGGATGGTTATGGAGTGTTTGGTAAAACGCAGGAAACTGGGGGGTGTGGGGATGGGGATTGAGCGAGCACGTCTGCCCGGGGCAGGCCTGGCAGCTGCAGGCCCGGTTCTCGGCGCTCCGAGGTGCCGCCCCCAGCCTGGTGGAGGGGAGCCGGTTCCCGAGGCCTCGCAGCGCGGCAGGGAAGCAGCCCCAGACGCCCTCCGCGGGCTCTCTGACGTCCTCTCCCCGCTTCCTTGCAG
Seq C2 exon
TGGACATCCTCATCATGGATGACGACGACGTCCCCAGCTGGCCCCCGACCAAGCTGTCCCCTTCCCCATCGGCGGCCCCAGCCGGCCCTCCGCCCCGGCCGCGGCCGCCCGCGCCCTACATCTGCAACGAGTGCGGCAAGAGCTTCAGCCACTGGTCCAAGCTGACGCGGCACCAGCGCGGGGGGGGTGGCGAGCGGCCCAACGCCTGCGCCGACTGCGGCAAGACCTTCTCGCAGAGCTCGCACCTGGTGCAGCACCGGCGCATCCACACGGGCGAGAAGCCCTATGCCTGCTCTGAGTGCGGCAAGCGCTTCAGCTGGAGCTCCAACCTTATGCAGCACCAGCGCATCCACACGGGCGAGAAGCCCTACGCCTGCCCCGATTGCGGCCGCAGCTTCACGCAGAGCAAGAGCCTGGCCAAGCACCGGCGCTCGCACAGCGGCCTCAAGCCCTTCGTGTGCCCGCGCTGTGGCCGCGGCTTCAGCCAGCCCAAGAGCCTGGCGCGCCACCTGCGGCTGCACCCCGAGCTGTCGGGGCCGGGCGTGGCGGCCAAGGTGCTAGCGGCCAGCGTGCGCCGGGCCAAGGCGCCCGAGGAGGCGGCGGCGGCGGACGGCGAGATCGCCATCCCGGTGGGCGACGGCGAGGGCATCATCGTGGTGGGCGCGCCGGGCGAGGGGGCGGCGGCGGCTGCAGCCATGGCGAGCACGGGGGCCAGGGCGCCGGGACCCCGCTCGCGGCGCGCCCCGGCCCCCAAGCCGTACGTGTGTGTGGAGTGCGGGAAGGGCTTCGGGCACGGGGCCGGGCTGCTGGCCCACCAGCGCGCCCAGCACGGGGACGGGCTGGGAGCAGCGGGGGGTGAGGAGCCGGCGCACATCTGCGTGGAGTGCGGCGAGGGCTTCGTGCAGGGCGCGGCGCTGCGCCGGCACAAGAAGGTGCACGCCGTGGGCGCGCCCTCGGTCTGCAGCCACTGCGGACAGAACTACTACCGGGCGGGCGGGGACGACGACGACGAGGACGACGACGAGGAGGCGGCGGGCGGGCGGTGCAGCGAGTGCCGCGGCGGGGAGGGCCGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002904:ENSBTAT00000003771:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=7.0),PF097235=Zn-ribbon_8=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF0009621=zf-C2H2=WD(100=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development