BtaINT0166124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025023 | ZNF8
Description
Bos taurus zinc finger protein 8 (ZNF8), mRNA. [Source:RefSeq mRNA;Acc:NM_001098470]
Coordinates
chr18:65787332-65792875:+
Coord C1 exon
chr18:65787332-65787526
Coord A exon
chr18:65787527-65792748
Coord C2 exon
chr18:65792749-65792875
Length
5222 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CAGCATGTGTGATGTTTCAGGAG
3' ss Score
5.71
Exon sequences
Seq C1 exon
CTGTAGTTTCGGCGTCCCCAGCGCGGCCGCCATTGTCCAGCGGGCTGTGAGTCTTGAGGTTCTTGTGTCGGGGACGGCTCTCGTGTTCAGGGTCGCCTCGGGCACCAGTCCTCTACCTGTCAGCCTAGGATGGACCCCGAGGAGGAAGCGGCGGCACTGGCGATGGCTATGGGGCCGCCGGTAGAACGGCTCCAG
Seq A exon
GTACGGCAGAACAATAATAGCAACAATAACAACGATGGCAGCGGGCTTCGGGCCGGGTATTACCCCTTTAGCCCTCACAGCGCACGGTGGGCAGGGTCGGGCCTTATCCCCTGGACAGACGGGGAGACTGAAGCCCAGGTTGGGGTACGCTGACATGCCCAGCTGGTGAGGGGTGGCGTCTGGTTCGAACCCGGGCTTTCCCGTCCCCGAGTGCGCGTGCTCCGCGAGTCCTCCGGCCTTTCCGTTCAGGGAAAGGACTTGGGTTCGTTCCCGAGCATCAGGCTGGCCCCCCGCCGATATCCTGCCCCCCTCCCCCTCCCCGAAGGCCGTCCACCGTGAGGATGGGTCTTAGAAACTGTAGTAGAGATGCTTCAACGTGCGGAGTCAACCGACACCCACCCAGAGTCCCGCTCCCCGAAACCCCGGGCACCGCCTCCTGGGTAAGGACACACCGCGTTATTGGGGCGGGAGCGACTATTAGGGTCTGACCCCTGCCGGGCTGTCGGGGACTCAGTTCAGAGCAGTCTCCAAGGGCATCTGGGAAGGCGCCTGTTTGAAAGCTCCGGCCCTTCTAGACAAAGTGGCTGCTGCCCGTGTTCTCCATACCGTGCTGACTCCACGTGGCAGGAACCAAAAGAAATGTATATAATTCCTTAAGTTCCAGACTTTCTGTCCTTCTGTCCTTGCCTCCCGGCTTTTGCATTTATTTCAGATTTGGTATGCAAAGTGAGACTGTTGATAATCCTAGGTGTGCACAGTGTTCGGAGACTGTTGCAAATGTGTAGGAGATGCAACCTCGTTTTTGTTTGCTTTTGCTGTGGATCCCGGAGAAGGGGCAGGGAGTGAGCAGTGTCAAAGAGTATCAGAGCTGGGCCATAGTTAAAGCAGTAAAAACAGGTTTTCTTTGGGGACAGTTGCAATAGGGGGAAAGAGACTTCAGTATAGAACTGGGCTCAACTGTGAATACAACAAGCAAATGTGGGTATTTTTTATAGTGGGGGTAGAGGTAATTTTTGGTTGTTGTCTGACTGTGCGACCTCATGGACTGCAGCATGCCAGACTTCCCTGTCCTTCACTATCTCCCAGAGTTTGCTCAAACTCATGTCCATTGAGTTGGCGATGCCATCCAACTATCTCATCCTCTGTCATCCCCTTCTGCTCCTGCGTTCAATCTTTCACAGCATCAGGGTCTTTTCCAATGAGTTGGCTCTTCGCATCAGGTGGCCAAAGTATTGGGAGCTTCAGTATCAGTTCTTCCAATGAATATTCAGGGTTGGTTTCCTTTAGGATGACTGGTTAGGTTTCCTTGCAGTCCACGGGACTCTCAAGAGTCTTCTCCAGCACCGCAATTCGAAAGCATCAGTTCTTTGGCGCTCAGCCTTCTTTATGGTCCAGCTGTACATCCATACATGACATACACGACTGCATGTCTGTTCGCAATGCAGGAGATCCAGGTTCCATCTCTGGGTGGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGATCCAGGCAAGAGGAATTCTCAAGAGAATTCAAGAAAATTCCAGACAGAGGAGCCTGATGGGCTACAGTCCATGGGGTCACAAAGAATTGGACATGGCTGAGTGACTAATACTTTCACTTAACTATATGGACAAAGTGATGTCTCTGCTTTTTAATATGCTGTCTAGGTTTGTCATAGCTTTCCTTTGAGGGAGCAAGCATCTTTTAAAAATTTCATGGTTGCAGTTACCCTCTGCAGTGATTTTGGAGCCCAAGAAAATAAAGTCTGTCACCATTTCCATTGTTTACCCATCTGTTTGCCATGAAGTGGTGGGACCAGATGCCATGATCTTAGTTTTCCGAATGTTGAGTTTTAAGTCAGCTTTTTCACTCTCCTCTTTCACCCTCATCAAGAGACTCCTTAGTTCCCCTTTACTTTCTGCCATTAGAGTGGTGTCATCTGCATATCTTGCTAAACTGACCTAAAACAGGGTTCTTGCTGAATCAGGCCAAATGATGGGATGTTACTTGGAGGGCTGTGGGGGATGAGGACTTTGAAAAGATATCAAGAGTGATCAGATATGGAGGGTAGGATTCTTGGGACCAATGGGACCCAAGAAACCAATGGGACCAGAATTTCGGTAAAACTGAATGATGCAGAAATGGATGCAGAAGCCCAAAGGTCAAAGCTTATTTGGGAAGAGGTTTTGAGCCAGACTAAAGTTCGGTCAAGGAGAGAATCTGTCAGCAGTGAGAGGCTTGAGAGTGTGTTTGTTATCTGTTGCTGTGCAACAAATGATGAAAACATAGTGGCCTAAAACAACAATCAGTATTACCTCAGTTGCTGATGACAGGAGTCCTGTAATAACTGCTGGTGGTTCTGGCCTGGGTTCATGACAGTCAGGATGGCAGCCTGGACTGCTGTCACCTGAGACTTGACTGGGGCTGGAGGATCCACCTCCAGGATGGCTCATTCATGCGAGTTGTTAGGAGGCCTCTGTTCCTTCTGATGCGGGACTCTCTCTGGAGCCGTCTGGGCGTTCTTACATGGCGCCCAGCTTCCCACAAAGGGAATGATCCAAGAGAGGGCTCGGTGGAAGCCACAGTGTCTTGTGACCTGGGCTCAGAATTCACTCTCTGAATTATCGTATCAGTTACATAAGTCAGATCTGCTCAGTATAGGAGGAGGCTACACAGGGGCTGGGGATCACTGGGGTCCATCTTGGAGGCCTGCCACCACAGGAGGCGAGGGTCGGAAGCAGGGGGCTTTGAGGTCCAGTGTGTTAGCATCCTTTGGCTGCCATGACAGATTATTACAAACGTGATGGTTTGAAATATATATTAATATGTTGATTCTTAGGGTTCCAGAGGTCAGGAGTCTGAAATCACTTTCCCTGAACTGAGATCAGGCGTGGGCAGCTGCACCTTTCTTGTCAAGGCTCTCCGCTGGTCTCTCGTTGCCTTTTTCAGCTATTAGAGCCATAGACCTTGCATTTTTTGGCTCATGGGCCTTTGTCCACTTTCATTTTGCTTTAGTGGTCACATTATCTTCTGCCTCCTGTAGTTCAGTCTCCCAATACCTTCCCTTCAGAAGGACATTTGTGATTGAATTTAAGGACCACCTGGATATTCCAGGATAATCTCCCTATTTTTAAAACCCATTAAAGGTTTAAAATGGGTTTAAAACCCATTAAGGGACACGATTAACACATCCACAGAGTCCCTTTTGCCATTTATGATAATATTCACAGGTTCCAAGAACTAGGACCTGAATATCTTTAGGGGCCATTTTTCAGCTACCCATAGCCAGGCTAAAGGGGGTCATCCTTTATCGAAAGGAAGGAGCTATTTGAATGCTTTAAGCGGGAGTGGCATGGGTTTGAAAAATGCATTCAGGCATTGCCGAGTGGGAGTAAGAGACACTGAGAGCTAGCTAACGCCCAGGGTGGAGTCCAGTGACTGGGTGCTGGCCTGCTCAGCTCGGGGAGGATGTATGGAGGGAGCAGGTCTGACAAAACCCATCCCGCTGGGCCCACAGTGCAGAGCAGGAGACCAGGAGGAGGGCTGCGGGGGTCTGCGGTGAAGCAGCGGGGAGGCTCAAAGACAGCGAGGAGCGGGCTTCTGCTGGGATGCCAGGAGGAGACATGCGGGACTCCTGTGATGCCGCTGAGAGGTCTGTGGCCTAGACAGCCCGCAGCGGGCCCAGCACTGTCACTGGCGCCGCGTGCAGAGCAGGTAATGGCGGCCGGAGGCACAGCGACCGTGTTTTCAGGGCTGGAGGACCGTCAGAGTGAGAGGTGAGGATTCGGGGACAGGAGCAGAGACCTTGGTCCCAACCAAAGGGTTCTGTAAATTTGCTGCATAATTTTTGGTCGAACCACATGCCACCTGTACTGTAATTTCTTAAATATTTAAAAATGTAATTGTGTTTTTCTTAAAGGAAATACCACTTGAAAATTGAAGTCTTTTGTATGTGATTTTGACTTGCATTTCCCTGGTGGCGAATGACCTTGAGCATCTTTTCAGGTGCTTATTAGCTGATTGTTTCTTTTCTTTTTTTTTTTTTTTTTGTTTATTTTCTTTTATATCTTCTTGAAGAAATACCTATTTAGAGTCTTTGCTTATTTATTGGATTGTCTTCATTATTGAGTCTTTTTTTTTTTTTTTTCATTGTTGAGTCTTAAGAGTTCTCTATATCTTCGGAATACAAGTCACTTATGAGAGAGATGATCTGCAATCATCACATCCCATCATACGAGTATCTTTTCACTTTCCTGTTAATGTCCCTTAGAAACAAAAAAGGTTTTAATTTTTATGAAGTCCAGTTTACTTATTTTTTTTACTTTATTGCTTGTTCTTTTGCTGTTATAGCTAAGAATCCTTTGTCAGATACAGTTATAAAAATTTAGCCATATGTTTTCTTCTAAGAGGTTAATAGTTTTAACTCTTATATTTATGCTTTTGATCCATTTGAGTTAAATTTTATATATGGCGTGAGATAGGAGACTTAACTTTATTCTTTTACATGGAACTACAAGTTTTTCCCTCATAAAATGTGGCCTAATTTTCGGTTTCTCACCAGAGACTGGGCATTCTGACCACGTGAGGCCTGTATTTTGCCACAGTCAATTGGTTCTGAGTCCGAGCTGCCGCTTCAGACAGGGCACATGTTACCATCACTTCCTGTGCCACCTCTCATAAGTTAAGTACCCTTACAGGCCCTTACATGAACCCACTTCAGTCACTTGTGAGCCTGCCCAGTCTCTGAAGGCCAGTGAATTTCTAACTCCAACTGCACACCCCTCTTTTCGGGGAGGAGGATAAGCCTTGCTTTGACTCTGAGGATTTTTTAGTGTGTCAGTTAGCCGTTGTTGCATAACAGACTATCCCAAAATTTGGGGGCTTAGACACAACAGTCACTATTTCTTTAGCCCACAAATCTGCAAGTCAGCAGTTTAGACTGGTCTCTGTCAGCACCTGCGCCTGTCCAAGGTTGGTTGTGGGTTGGTTGGCTTTGCTCTTGCCCGGATGCCTTCTTGCATCCTGGCCGACAGCCCACCCCAGGCGGGAGCCCAGCAGGGCCCAGGAAACCTGACTCGCGTTGCTCGGGACGCACTCCCTGGCCACTGGCCTGCTTGTCTTCACCTTTCCCACCCCTCCTCCTAATCCTGAAGACACCGATAGGGACAGTCCGGGTGATGCAGCATGTGTGATGTTTCAG
Seq C2 exon
GAGCCGGTGACTTTCCGGGACGTGGCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGGCCCGGCCCAGAGGACCCTGTACCGAGACGTGATGCTGGAGACCTTTGGGCACCTGCTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025023:ENSBTAT00000004508:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development