HsaINT0188433 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:58278951-58285843:+
Coord C1 exon
chr19:58278951-58279147
Coord A exon
chr19:58279148-58285716
Coord C2 exon
chr19:58285717-58285843
Length
6569 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GAATGTGTGTGATGTTTCAGGAA
3' ss Score
7.87
Exon sequences
Seq C1 exon
AGTTGTAGTCGCCGCGTCGCCGGTGCGGCCGCCATTGTCCGGCGTTCGGCGAGTCGGGTGGTCCCTTTGGCTGGAGTGCCTCTCTGGTCTGGGGATCACCTCAGGCGCTGTCCTTCACTGGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCGGGAGTGATGTCTGTGGGGCCGCCGGCGGCCCGGCTTCAG
Seq A exon
GTAACAATAACAACAATAACGACGGCGGCGGGCTCCGGGCAAGCGTCTCCCGCGCAGACTGACCCTTTCACCTCGCGGCGCGATGAGAGCGGCACCGCTGTTAATGCCCTTGACACGTGGGGAAACTCAGACGCGGGTCGGGGCGTGGTGACCGTCCTGGCTGGTCAGAGAGGGGGCCGGGATTCCAACCAGGCGCCTGGCCCCCGAATGCGCATGCTCCACGCGGCTCTGTCCTCCCCAGGGCTGGGGTCGGTCATTCCCGAGAGAATCGAGCAGGCCCATCTCCTGCGTTCTGCTCCGCCCCGCCGACACCCTTGCCCATTCCAGGAAGGTCTGTCCTCGTGTTGACTGATAACAGTAATTGTAGCGTTGGCCGGGTGCCCAGATGGCAAGAATCATCGAATAGAGATGCTTTAACGCGTGGAGTCAGCGGACACCCACCGGGACCCCAGCACCGCGGAGCCCCTGCCCTGGGGCTTGGGCACAACCTCTTGGGGGCAATGATGGGTCACCACGCACTGAGTGTGATGAGAGTGACCACCAGGGTCGTCCCCTGCGAGACTGTGGGAGAACTGCAGTGCAGGGCGGTCAGTGTTTGCAGGGCCATCTGGCCATCAGAGCTCCACTTTCTAGACAAAGTGGTTGCGGCCTGTGTTCTCCATAAAGCTGCCTCGCGTGGCAGGAAACAACAATAATTATCCTTCCTCAAGCTCTGCAACTTTGAAATTATACTTTTTTTTATTTTTTGTCGTTGGTTTGTTCATGGGGATTTGCATTATTTCAGATTTGGTACACAAAGTGAGACTTGATAATCTTAGGTTGCAGGTTTTCAGATGTGTGTTGCTCCAAATTTGCATGAAATGCTACCACGTTTTATTTTGTTCTTGCTGTGGATGGGGGACAAGGAATGAGTCGTAAGAAAGGCTTGAGAGAAAGTGTATTAGTTACCTGTTGCTGTGTAACTCAAAACTTCGTGACCTGGAACAACAATAAATATCTCACGAGTTCTGACAGGAGTAATGGAATGTCCTAGCTGGTGGTTCTGGTTCAGGCCCATGAAGTTACAGTGAAGATGTCAGCATAGCTGTTGTCACCTGAGACCTGAGTCTGGAGGATCCACCTCCAGGATGGCTCACTCACATGTCTGTTGATAGGAGACCTCAGTTGTTCTCCATGTAGGCCTCTCTTTGGAACTGCTAGGGATCCTTGCAACATGGCATCTGGCTTCCCACAGAACAAGTGATCCAGGAGAGGGCAAGGTAGAAACTGTAACACCTTCCATGACCTGGATTCAGAATTCACACTCTTGTCACTTCCACGGTGTCTTACTGGTTACAAAGTCAACCTTGTTGAGTGTTGGAGGGGACCACACCAGGGCTGGAGGTCATTGGCAGAGGTGGTGGGGGAGCATCTTGGAGACTGTCCATCACAGGAGACAAGGACCAGAATGGAGAGCTTCAAGGTCCAGTGTTTTATCTGGTTATCTGTGTCTGCTGTAACAATTCACTACAAATTTTGTGGCTTAAAACATTTGTTCTTAGGTTCTGGAGGTCAGAAGTCTGAAATCGGTTTTCTGGTCTGGAATCAAGGTATGAGCAGAGCTACCCTCCCTACCAAGGTTCTAGGGTAGAATGTTTCCTCGTCTTTTCCAGCTGTGAGAGGTACAGACCTTCTATTCCTTGCCTCATGGCCCTTTGCCTGTCTTCAAAGCCTGCATTGTAGCATGTTGCTTCAGTGATCATATTGCCTTATGTCTTCTATAGTCATAGCTCCCTTTGTCTACCTCTTATAAAGACACTTGTGATTGCATTTAGGGCCCACCTGGATAATCCAGGATAATTTTTCTGTTTGAAAATCCTAATCACATCTGCACAGTTCCTTTTACCATATATAGTAATATTCACAGGTTCTAGGAACTAGGACCTGGATATCCTTGGAGGCCATTATATATCTCAGTCTACCATAGCCAGGCTGAGAGGAGCCATCCAGTATTCAGTGATGAGAAGGAGCCATTCACGTGTTTTAAGCAGGACTGGCATAGGGTTGAAAAAATCCACTTATGCATTAGGGGCTGGTGGGAAGGGAGATACTGGCAGCTCAACTAAGGCAGTGGGAAAAAGAGAGGAGTGGTTAGGCCCAGTGACCAGGTGTTGGCTGATGCTGGGGTGAAAAGAATATGTAAAGGAGAAACATCAGAGCACAGCCCCACCCCTTCAGGCTCCAGAAGTGCAAGACAAGAGGGAAGGCTGCAGGGATCTGATGTAGGGCAGAAAGAACATCATGAGACAACAAGGAGTGGGCTTCTGCTAGAATTCCAAGAAGGAAGCCAAGAGGAGGCATGAAGGACTTGTATGATGCCACTGAGAATTCTCATGGCTTGGACAGACCAGTACTCAGTGGACGTGGTGTCTAGGCTGTCACCAGTGACTCTTGCAGAATGGGTGATGATGGGAGGTGGGGGCAGGAGGCACGGGAAGCACAAATCAAAATTGGTGGGCATTCTGAGTGGAGGAAAGCGAAGACACAGAGACAGGAGCAGAGACCTCAGTTCCCAACCAAAGGCATCTTTCTGTATGTTTCCTATTAGAGCCACCTGCTACCTGTACTAAAATTTCTTTCTTATTTTTTAATCTACTCATGTTTTTCTTAAAAGGAAATGTCCTTTTAAAATTGAAGTATTTGGGGCCTGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCACAGCAGATGGATCACTTCAGGTTAGGAGTTCAAGACCAGCCTGGCCAACGTGGTGCAACCCCATCTCTACTAAAAGTACAAAAATTAGCTGGGTTTGGTGGCACATGCCTGTAATCCCAGTTATTTGGGAAGCTGAGGTGGGAGAATCACATGAACCAGGGAGATGGAGGTCGCAGTGAACCGAGATTGCACCACTGCACTGCAGCCTGGTCAACAGAGTGAGGCCCTGTCTCAAAATAAAAAATAAAAAAATTGAAGTATTTAGTATATGTGGTTTTGTTTTGTTTTTTAACCTAGCAGCAACACTGGTGGTGTATAGTTTTGATTTTTCATTTCCCTGATGACTAATGATGTTGAACATCTTTTCATGTACTTATTTGCCATTTGTGTATCTTCTTTTATATATTCTTCAAAGAAATAACTATACAGATTCTTTGCCTATTTTAACTGGGTTGTCTTTTTATTACTGAGTTGTATGTGTTCATTACATATTCTAGATACAAGTCTCTTATCAGATATGTGATTCCCAATTATTATCTCCCATTCTGTGAGTTGTCTTTTCACTTTCTTGCTAATGTCCTTTGAACTACAAAAGTTTTTGTTTTGATGAAGTCCAATTGATTACATTTAGTTGCTTATCCTTTTGGTTTCATATCTAAGAATCCCTTGCCAAATCCAAGGTTACAAAGATTTATCTCTCTGTTTTCCTCTAAGAGTTTTATAGTTTTAGCTCTTACTTTTAATTTAATTTAATTTTTTTTTTTTTGAGATGGAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGAGCACGCTGCCACGCCCGGCTAATTTTTGATATTTTAGTAGAGATGGTGTTTCACCATGTTGCCCAGGCTAGTCACGAACTCCTGAGCTCAGGCAATCCACTCGTCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTCTTACATTTATGGCTTTGTTTCTATTTTATTTTATTTCTTTTTTTTCTCTTCTTTTTTTTTTCTTTGAGACAGGATGTCACTCTGGTTGCTTAGGCTGGAGTGCGGTGGCATGATCTTGGCTTGCTGCAACCTCCACTTTCCAGACTCAAGCACTCCTCCTACATCAGCCTCCCAAGTAGCTGGGACTACAGGCAGCCTGGCTAATTTTTTTCAAATTTTTTTTGTAGAGGCAGGGTTTTACCATGTTGCCCAGGCCAGTCTTGATCTCCTGGACTCGAGTGATCTGCCTGCCTCAGCCTCACAAAGTGCTGGGATTACAAGCATGAGCCACTCTGCCCAGCCAGCCTAATTTGTTTTGAGTTAATTTTTATATATGATATAAGATAGAAGTCTGTGTTAGTTTGAATGTGTCTCCCAAATTTCATGTGTTGATAGTATTTGAAGGTGGCGACTTTTGGGAGAAATTTAGGATTAGATAAGGTTATCAGGATTGGACTCCCTTGATGGGACTAGTGGCTTTAGAAGGAGAGAGAGACCTGAGCTGGCACACTCTTGCCCTCTCGCCATGTGATGCCCTCCACCATCTTATGTCATAACAAGAAGGCCCTCACCAGATGCCAGTACCATGATATTAGACTTCCCAGCCTTCAGAACTGTAAGAAATAAACTCTTTTTTTTTTTTTTTTTTGAGTCGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGACTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCATGTAGCTGGAACTACAGACGCCCACCACCACGCTCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCCAGCCCACAAATAAACTGTCTTCATCAAAGTTATTGAAAGAGAGAGAGAGAAAAAAAGCAACTTTCTTTATAAATTACTTCGTCCTTAGGAGGACAAGGCGAGAGGATCACTTGAGGTCAGGAGTTCGACACCAGCCTGGCCAACATGGAGAAACCCTGTCTCTACTAAAAAATACAAAAATTAGCTGGGTGTGGTGGCGTGCACCTGTAGTCCTAGCTACTCAGGAGGCTGAGCCAGGAGAATCAACTGAATCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGATTGACAGAGTGAGACTCCCATCTCGAGAAAAAAAAAATAATAAATTATTCAGTCTGTGATATTCTGTTACAGCAACAGAAAATATGCTGGGACAGGGACTATCTTTACTCTTTTCCATGTGGCTATCCAGATGTCCTGTAGGAAGTGTTTGTAAACCACTTAATCATTATACAGCCCCCAAGGGGTGATGCTTTGTTGACATGGAAACTGGGAAGCAAAGATGCTTCTTGGGGACGAAGTGACTGAGCCAAGACTCTGATCCAGAAATATCTGGCTTTCAAGCATGGCTGCAGAAGGGCTTTGTTTATGGGACACATTTTAGGTAATGTTGCATCAACTTATAAAAATCAGAATTTTTCACGTAAAGGCCAGGCGCGGCGGCTCCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGCTAGGGGTTCGAGACCAACCTGGCCAACATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGCTCCTGTAGTCCCAGCTACTACGGAGGCTGGGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTAAGTGGAGGTGGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTACCTCAAAAAGAAAAATAATTTTTCACATAAAAATCTGACCTAATTTTCAGCTTCTCTTCAGAGATGAGCAGTTCTGACAAAGGGACCTGTATTTTCCCGTAATCAGTGAGTTCTGAGTCCCTGCTGCTCCTTCAGACAGGGTCCATGCTCCCCATCACCTCCAGTCCCACCACTCATAGGTAAGTGTCCTTGTGGGCTCTTAAACTGGCCCACTTCTGTCATGTGAGCCTGCCTTGCCCTGAAAGCAGGCGAATTTCTGACCCCAGCCCTGTGTGCTTCTCTTTTCAGGAAGGATGGTGAACCTGTTTTTTTGTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCTCAGCTGGAGTGCAGTGGTGTCTTGGCTCACTGCAACCTCCACCTCCTGGGCTCAAGCGATTCTGCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGCATGTGGCCCAGCCAATTTCACTTTGTATCTAAGTATTAGTGAGTGTATTAGTTAGCTGCTGTGTAACACTGTCCTAAAACAGTATCTGTTTTACTTAAAACAGTAACTGTTTCTTTAGCTCACAAACCTGCAAATAAGTGGTTTAGGCCAGTCTCTGCTGGTACCCTCGTCTGTCTTGTTAGATGTAGGTCAGCTCTGCCTGGCGTTGTTGATCTTGGTGAGTCCTCTCACATGTCCTCACTGTACAACCCACACCTATGTGTAGTGGCCTAATAGGTGCCCAGTGAGACCTGACTCCCATCATTCATAACGTGCAGTCTCTCGTGACACAGGCCTGCCTGTTTTCTCCTTTTCCATTCTTCCTCTGCCAGAAAGCACTGATGGAGATAGTCCAGCTGATTGAGAATGTGTGTGATGTTTCAG
Seq C2 exon
GAACCAGTGACCTTCCGGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGGGCAGCTGGACCCTACCCAGAGGATCCTCTACCGTGACGTGATGCTGGAGACCTTTGGTCACCTGCTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278129:ENST00000621650:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains