HsaINT0188433 @ hg19
Intron Retention
Gene
ENSG00000083842 | ZNF8
Description
zinc finger protein 8 [Source:HGNC Symbol;Acc:13154]
Coordinates
chr19:58790318-58797209:+
Coord C1 exon
chr19:58790318-58790513
Coord A exon
chr19:58790514-58797082
Coord C2 exon
chr19:58797083-58797209
Length
6569 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GAATGTGTGTGATGTTTCAGGAA
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTTGTAGTCGCCGCGTCGCCGGTGCGGCCGCCATTGTCCGGCGTTCGGCGAGTCGGGTGGTCCCTTTGGCTGGAGTGCCTCTCTGGTCTGGGGATCACCTCAGGCGCTGTCCTTCACTGGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCGGGAGTGATGTCTGTGGGGCCGCCGGCGGCCCGGCTTCAG
Seq A exon
GTAACAATAACAACAATAACGACGGCGGCGGGCTCCGGGCAAGCGTCTCCCGCGCAGACTGACCCTTTCACCTCGCGGCGCGATGAGAGCGGCACCGCTGTTAATGCCCTTGACACGTGGGGAAACTCAGACGCGGGTCGGGGCGTGGTGACCGTCCTGGCTGGTCAGAGAGGGGGCCGGGATTCCAACCAGGCGCCTGGCCCCCGAATGCGCATGCTCCACGCGGCTCTGTCCTCCCCAGGGCTGGGGTCGGTCATTCCCGAGAGAATCGAGCAGGCCCATCTCCTGCGTTCTGCTCCGCCCCGCCGACACCCTTGCCCATTCCAGGAAGGTCTGTCCTCGTGTTGACTGATAACAGTAATTGTAGCGTTGGCCGGGTGCCCAGATGGCAAGAATCATCGAATAGAGATGCTTTAACGCGTGGAGTCAGCGGACACCCACCGGGACCCCAGCACCGCGGAGCCCCTGCCCTGGGGCTTGGGCACAACCTCTTGGGGGCAATGATGGGTCACCACGCACTGAGTGTGATGAGAGTGACCACCAGGGTCGTCCCCTGCGAGACTGTGGGAGAACTGCAGTGCAGGGCGGTCAGTGTTTGCAGGGCCATCTGGCCATCAGAGCTCCACTTTCTAGACAAAGTGGTTGCGGCCTGTGTTCTCCATAAAGCTGCCTCGCGTGGCAGGAAACAACAATAATTATCCTTCCTCAAGCTCTGCAACTTTGAAATTATACTTTTTTTTATTTTTTGTCGTTGGTTTGTTCATGGGGATTTGCATTATTTCAGATTTGGTACACAAAGTGAGACTTGATAATCTTAGGTTGCAGGTTTTCAGATGTGTGTTGCTCCAAATTTGCATGAAATGCTACCACGTTTTATTTTGTTCTTGCTGTGGATGGGGGACAAGGAATGAGTCGTAAGAAAGGCTTGAGAGAAAGTGTATTAGTTACCTGTTGCTGTGTAACTCAAAACTTCGTGACCTGGAACAACAATAAATATCTCACGAGTTCTGACAGGAGTAATGGAATGTCCTAGCTGGTGGTTCTGGTTCAGGCCCATGAAGTTACAGTGAAGATGTCAGCATAGCTGTTGTCACCTGAGACCTGAGTCTGGAGGATCCACCTCCAGGATGGCTCACTCACATGTCTGTTGATAGGAGACCTCAGTTGTTCTCCATGTAGGCCTCTCTTTGGAACTGCTAGGGATCCTTGCAACATGGCATCTGGCTTCCCACAGAACAAGTGATCCAGGAGAGGGCAAGGTAGAAACTGTAACACCTTCCATGACCTGGATTCAGAATTCACACTCTTGTCACTTCCACGGTGTCTTACTGGTTACAAAGTCAACCTTGTTGAGTGTTGGAGGGGACCACACCAGGGCTGGAGGTCATTGGCAGAGGTGGTGGGGGAGCATCTTGGAGACTGTCCATCACAGGAGACAAGGACCAGAATGGAGAGCTTCAAGGTCCAGTGTTTTATCTGGTTATCTGTGTCTGCTGTAACAATTCACTACAAATTTTGTGGCTTAAAACATTTGTTCTTAGGTTCTGGAGGTCAGAAGTCTGAAATCGGTTTTCTGGTCTGGAATCAAGGTATGAGCAGAGCTACCCTCCCTACCAAGGTTCTAGGGTAGAATGTTTCCTCGTCTTTTCCAGCTGTGAGAGGTACAGACCTTCTATTCCTTGCCTCATGGCCCTTTGCCTGTCTTCAAAGCCTGCATTGTAGCATGTTGCTTCAGTGATCATATTGCCTTATGTCTTCTATAGTCATAGCTCCCTTTGTCTACCTCTTATAAAGACACTTGTGATTGCATTTAGGGCCCACCTGGATAATCCAGGATAATTTTTCTGTTTGAAAATCCTAATCACATCTGCACAGTTCCTTTTACCATATATAGTAATATTCACAGGTTCTAGGAACTAGGACCTGGATATCCTTGGAGGCCATTATATATCTCAGTCTACCATAGCCAGGCTGAGAGGAGCCATCCAGTATTCAGTGATGAGAAGGAGCCATTCACGTGTTTTAAGCAGGACTGGCATAGGGTTGAAAAAATCCACTTATGCATTAGGGGCTGGTGGGAAGGGAGATACTGGCAGCTCAACTAAGGCAGTGGGAAAAAGAGAGGAGTGGTTAGGCCCAGTGACCAGGTGTTGGCTGATGCTGGGGTGAAAAGAATATGTAAAGGAGAAACATCAGAGCACAGCCCCACCCCTTCAGGCTCCAGAAGTGCAAGACAAGAGGGAAGGCTGCAGGGATCTGATGTAGGGCAGAAAGAACATCATGAGACAACAAGGAGTGGGCTTCTGCTAGAATTCCAAGAAGGAAGCCAAGAGGAGGCATGAAGGACTTGTATGATGCCACTGAGAATTCTCATGGCTTGGACAGACCAGTACTCAGTGGACGTGGTGTCTAGGCTGTCACCAGTGACTCTTGCAGAATGGGTGATGATGGGAGGTGGGGGCAGGAGGCACGGGAAGCACAAATCAAAATTGGTGGGCATTCTGAGTGGAGGAAAGCGAAGACACAGAGACAGGAGCAGAGACCTCAGTTCCCAACCAAAGGCATCTTTCTGTATGTTTCCTATTAGAGCCACCTGCTACCTGTACTAAAATTTCTTTCTTATTTTTTAATCTACTCATGTTTTTCTTAAAAGGAAATGTCCTTTTAAAATTGAAGTATTTGGGGCCTGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCACAGCAGATGGATCACTTCAGGTTAGGAGTTCAAGACCAGCCTGGCCAACGTGGTGCAACCCCATCTCTACTAAAAGTACAAAAATTAGCTGGGTTTGGTGGCACATGCCTGTAATCCCAGTTATTTGGGAAGCTGAGGTGGGAGAATCACATGAACCAGGGAGATGGAGGTCGCAGTGAACCGAGATTGCACCACTGCACTGCAGCCTGGTCAACAGAGTGAGGCCCTGTCTCAAAATAAAAAATAAAAAAATTGAAGTATTTAGTATATGTGGTTTTGTTTTGTTTTTTAACCTAGCAGCAACACTGGTGGTGTATAGTTTTGATTTTTCATTTCCCTGATGACTAATGATGTTGAACATCTTTTCATGTACTTATTTGCCATTTGTGTATCTTCTTTTATATATTCTTCAAAGAAATAACTATACAGATTCTTTGCCTATTTTAACTGGGTTGTCTTTTTATTACTGAGTTGTATGTGTTCATTACATATTCTAGATACAAGTCTCTTATCAGATATGTGATTCCCAATTATTATCTCCCATTCTGTGAGTTGTCTTTTCACTTTCTTGCTAATGTCCTTTGAACTACAAAAGTTTTTGTTTTGATGAAGTCCAATTGATTACATTTAGTTGCTTATCCTTTTGGTTTCATATCTAAGAATCCCTTGCCAAATCCAAGGTTACAAAGATTTATCTCTCTGTTTTCCTCTAAGAGTTTTATAGTTTTAGCTCTTACTTTTAATTTAATTTAATTTTTTTTTTTTTGAGATGGAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGAGCACGCTGCCACGCCCGGCTAATTTTTGATATTTTAGTAGAGATGGTGTTTCACCATGTTGCCCAGGCTAGTCACGAACTCCTGAGCTCAGGCAATCCACTCGTCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTCTTACATTTATGGCTTTGTTTCTATTTTATTTTATTTCTTTTTTTTCTCTTCTTTTTTTTTTCTTTGAGACAGGATGTCACTCTGGTTGCTTAGGCTGGAGTGCGGTGGCATGATCTTGGCTTGCTGCAACCTCCACTTTCCAGACTCAAGCACTCCTCCTACATCAGCCTCCCAAGTAGCTGGGACTACAGGCAGCCTGGCTAATTTTTTTCAAATTTTTTTTGTAGAGGCAGGGTTTTACCATGTTGCCCAGGCCAGTCTTGATCTCCTGGACTCGAGTGATCTGCCTGCCTCAGCCTCACAAAGTGCTGGGATTACAAGCATGAGCCACTCTGCCCAGCCAGCCTAATTTGTTTTGAGTTAATTTTTATATATGATATAAGATAGAAGTCTGTGTTAGTTTGAATGTGTCTCCCAAATTTCATGTGTTGATAGTATTTGAAGGTGGCGACTTTTGGGAGAAATTTAGGATTAGATAAGGTTATCAGGATTGGACTCCCTTGATGGGACTAGTGGCTTTAGAAGGAGAGAGAGACCTGAGCTGGCACACTCTTGCCCTCTCGCCATGTGATGCCCTCCACCATCTTATGTCATAACAAGAAGGCCCTCACCAGATGCCAGTACCATGATATTAGACTTCCCAGCCTTCAGAACTGTAAGAAATAAACTCTTTTTTTTTTTTTTTTTTGAGTCGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGACTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCATGTAGCTGGAACTACAGACGCCCACCACCACGCTCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCCAGCCCACAAATAAACTGTCTTCATCAAAGTTATTGAAAGAGAGAGAGAGAAAAAAAGCAACTTTCTTTATAAATTACTTCGTCCTTAGGAGGACAAGGCGAGAGGATCACTTGAGGTCAGGAGTTCGACACCAGCCTGGCCAACATGGAGAAACCCTGTCTCTACTAAAAAATACAAAAATTAGCTGGGTGTGGTGGCGTGCACCTGTAGTCCTAGCTACTCAGGAGGCTGAGCCAGGAGAATCAACTGAATCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGATTGACAGAGTGAGACTCCCATCTCGAGAAAAAAAAAATAATAAATTATTCAGTCTGTGATATTCTGTTACAGCAACAGAAAATATGCTGGGACAGGGACTATCTTTACTCTTTTCCATGTGGCTATCCAGATGTCCTGTAGGAAGTGTTTGTAAACCACTTAATCATTATACAGCCCCCAAGGGGTGATGCTTTGTTGACATGGAAACTGGGAAGCAAAGATGCTTCTTGGGGACGAAGTGACTGAGCCAAGACTCTGATCCAGAAATATCTGGCTTTCAAGCATGGCTGCAGAAGGGCTTTGTTTATGGGACACATTTTAGGTAATGTTGCATCAACTTATAAAAATCAGAATTTTTCACGTAAAGGCCAGGCGCGGCGGCTCCCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGCTAGGGGTTCGAGACCAACCTGGCCAACATGGTAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGCTCCTGTAGTCCCAGCTACTACGGAGGCTGGGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTAAGTGGAGGTGGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTACCTCAAAAAGAAAAATAATTTTTCACATAAAAATCTGACCTAATTTTCAGCTTCTCTTCAGAGATGAGCAGTTCTGACAAAGGGACCTGTATTTTCCCGTAATCAGTGAGTTCTGAGTCCCTGCTGCTCCTTCAGACAGGGTCCATGCTCCCCATCACCTCCAGTCCCACCACTCATAGGTAAGTGTCCTTGTGGGCTCTTAAACTGGCCCACTTCTGTCATGTGAGCCTGCCTTGCCCTGAAAGCAGGCGAATTTCTGACCCCAGCCCTGTGTGCTTCTCTTTTCAGGAAGGATGGTGAACCTGTTTTTTTGTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCTCAGCTGGAGTGCAGTGGTGTCTTGGCTCACTGCAACCTCCACCTCCTGGGCTCAAGCGATTCTGCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGCATGTGGCCCAGCCAATTTCACTTTGTATCTAAGTATTAGTGAGTGTATTAGTTAGCTGCTGTGTAACACTGTCCTAAAACAGTATCTGTTTTACTTAAAACAGTAACTGTTTCTTTAGCTCACAAACCTGCAAATAAGTGGTTTAGGCCAGTCTCTGCTGGTACCCTCGTCTGTCTTGTTAGATGTAGGTCAGCTCTGCCTGGCGTTGTTGATCTTGGTGAGTCCTCTCACATGTCCTCACTGTACAACCCACACCTATGTGTAGTGGCCTAATAGGTGCCCAGTGAGACCTGACTCCCATCATTCATAACGTGCAGTCTCTCGTGACACAGGCCTGCCTGTTTTCTCCTTTTCCATTCTTCCTCTGCCAGAAAGCACTGATGGAGATAGTCCAGCTGATTGAGAATGTGTGTGATGTTTCAG
Seq C2 exon
GAACCAGTGACCTTCCGGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGGGCAGCTGGACCCTACCCAGAGGATCCTCTACCGTGACGTGATGCTGGAGACCTTTGGTCACCTGCTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083842-ZNF8:NM_021089:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)