MmuINT0178605 @ mm10
Intron Retention
Gene
ENSMUSG00000060397 | Zfp128
Description
zinc finger protein 128 [Source:MGI Symbol;Acc:MGI:2389445]
Coordinates
chr7:12881177-12884769:+
Coord C1 exon
chr7:12881177-12881360
Coord A exon
chr7:12881361-12884642
Coord C2 exon
chr7:12884643-12884769
Length
3282 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTTGCCTGGAAATGTTTCAGGAG
3' ss Score
3.92
Exon sequences
Seq C1 exon
AGTGTCCCTGGCGCTGCCGCCATTGTCCAGCGGGAGGCCAGTCGGGTGGTCCCCAGGACGGGGCTGAGTTTAAAATTAGGGTGTCCTTGGACGTCTGTGGCTAACCTGTTGGCCTGGAATGGACCACCAGGACAAAGCAGCAACAGTGGCAATGGCCTCGCGGCCGCAAGCAACACAACTTCAG
Seq A exon
GTAACAAAAAGGACAGATTGGACTCCGAGTCCTGCTGTCCCCGACAGAGTGACCTGTAACCCGCGGCGCTTTTTCCACAAGAGAAACAAGCGCTGTGGCTCAGCCTCCGAGCCTGGGTCCAAATCTAGTTCCCTCTGTGTGCATGCTTCAGCCTCCTGTCTGCGTGCCATGGGGTGGAGGGGAGGAGGGTGGTCATTTCCCTGAGGACTGACAGGCTCTGCTCAGGGGTTCGATCCCACTCTGGCCAACGCCCTCCCATTTATCCCGAAAGACGGTTCTCGGAGATGACAGGTGACTGGCTAGCATTACAGAGCAACCACATTGCGGGTACGGTCCTCAAAACATGTCCTAAGGCGCAGAATCAACCGACTTTTAAGGGAACCTCCGCACCATGACCCCTATTTTGCAAGTAAGGCATAACTTCACGGGGCAGAGGTACCAAGTTAGGAAAACAGAAGTAACTAGTAAGGGTCACGCCCTTCTGGGCCTTGGGAAAACTGGTAGGTGTGGCTATCAGTGTTTGTCTAGCTCCTGATCATCAAAGTCTGCACTTGTAGACAAATTGCTTATTCTGTTCACCGTAGTTCACCTAGCAGAAGCCAAGACCATTTCATACATAAGTTCTGCAACTTTGAAATTATGCTCTGGAGGTCAGGAGGTGGGTATTTGGTTTGCTTGGGGGAAATTTGCGTTAATTACATTTGGTGTGAAAAGTAAGCTTATGATAGTCTTAGATTGCAAATGATCAGATTCATGTCATCTCAGTTTTTCATGAAATGTGACCAGAGTGTAGAACTGAGAACTGAGGCCTATCAACAGCTATATGAATGAGCCATAGTGAAGGTGGATTCGCCAGCCCCAGTCAAGTCTCAGGTAACCGTCATGAGGCTGACAGTTTGTCAAGGAGTAAGCGATGAGACGGGCGGGAAAAGAGGTGTGTTTAATCAATCTGTTGTCGTGTTTCAGGTAGTACACACAAAACGTAGTGAGACCTGAAATAAACACTACTTCATGGTTTCTGATGGGGTAGGAAATCAAGAGTGACTTAGTTTATGGATCTACCCTAGGCTCTTAAAGTTATATTCAAAATGACAGTCCAACAGTTATTACTTGAGACTTATCAGAGCCTAGAAGACCCACTGTCAAGATAGTTCATTCACATGCTGTTGGCAGGAGAACTCAGTGTTTCTCCTTGTAGGCCTTGCTATGAAGCACTTAGGTCTCACTGTGTAAAGTGAAGTTTCCTATAGAGTGGTGTGATCCAGAAGATGGCAAGGTAGAAGCTGTGTTGTCACCTGTGACCTCAGCTCAGACTTTATGCTGTCATTTCCACAGTATCCTATCAGTTATAGAAGTCAGCATGGTTGCATGCAGATCGGGGGTGGGGAGGGGAGGGGGGGTTACTAAGGGGCCATTTTGGAGACTAGCCTCCACAGGAGCAAGGACCAAATAAGGAGACCCTAGAGGTCTAGTACATTAGTTTCTTGTGGTTGCTGTAGCAAGTATTTACAAAATGTGTGGCAAAAGACAATGTACATTGTAAGCCAAGAGTGGTGACGCATGCATATAATCCAGCAACATGAGTGACTGAGGCAGGAAGATGATAAATTCAAAGCCAGGCTGGACCCTCTCTCAGAATTAAAAAAAAAAAAAAAGGTGCGGGGAGGGTGGGGGGGACACAGTCTAGAGATGAGAAGTCAGAAATGAGCACCACTAAACTAAGCAGAGCCATACTTCCACCAAGTTCTAGGGGATGTTCTCTGCTTTTCCAACTATAAGAGCTGTAGCCCCGGCACTCCTTGCCTTGTGGCCTTTTATCTAGCCTTAGAGCAGCAATGTAGCATCTCGCTTAGGTGATCACATTACTTTCCAACTTCTCAAGTCTCACGCCTATCTCCTAAATGTGTGGTTGCATTTAGAGGCCACCCAGATAACTCAGGACATGTGCCTGTTTTGTCGTCTTTATCATATCGGCAAAGTCTATGTTACTATTGTAATATTCATAAGTTTCAGGAGCAGGTACCTGGATATCTTTGGGAGAGTGATCAGCCTTTATTGAAAAGTGACAAGAAGCCATTCAAGTGTCCAGAGCAGTGGTTCTCAATGCTGTGACCCTTTAATACAGTTCGTCATACTGTGGGGACCCCCAACCACAAAATTATTTTGTTGCTACTTCATGACTATAATTTTGCTACTGTTGTGAATCGTAATGTAAATATCTGATATGCAGGATATCTGATATGCAACCCCCAAAGGAGTTGCAACCCACATCTTTTTTTTGGGGGGGGGTTTCGAGACATGATTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGATATGCGCCACCACTGCCCGGCTGCAACCCACATCTTAAGAAGCACTGTTTTAGGGACTGGTGGTGTAGCTCAGTGTGAAGAGTGCTTGCCTAGCATGTGGGACGTCCTAGCACCACACACAAAATGGAAAATCGGGGAAAGGTGTTGAGAAGGACTGGTATAGGGTTGGAAAGAACCTCTTGAACATTGGGTAAGATACTGAAAGCTGAGCGAAGATAGTAGGTTAAAAAGAGGGAGGGGGCAGAGATGGGACCTGGTGATCAAATAACAAATAATGCTGATGTGGCCTGGTCATCAATAGAAGAATGTGTAGAAGACAAAGATCTGATCACCTGAGGTTGCCTTCTGGCCTCTATACAGACATGCATACACACAAACACTCATAAACATACTCAAAAACAAAAAACCTAGTAGTCATATCTTTTTCTTTTAAGATTTATTTTTTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAGAAGAGGGAGTCAGATCTCTTTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCGGTGCTCCTGACCGCTGAGCCATCTCGCCAGCCCTTCTAGCCATTTCTATATGTCATAAACCTGCATGTCTAGTCTGTCTGATCAGTCATAGGTCAGCTGTGTCTGGCTTTGTTGATCCTGCCAAGTGCTCTCATATGTTGTCATGGTAGCCCATGCCTACCCCATAGTGCTCCAGTAGGCTCCCAGTGAGGGCTGAGGCACATCAGTCAGAGTGTACAGTTTGTCAAGACCCCTGCCTGCCTGTTTCCTCTACCACAGAGTTAGATGGTCCAACTAATCGAGGTTGCCTGGAAATGTTTCAG
Seq C2 exon
GAGCCAGTGACTTTCCGAGATGTGGCTGTGGACTTTACCCAAGAGGAGTGGGGGCAGCTGGACCCTACCCAGAGGACTCTGTATCGTGATGTGATGCTGGAGACCTTTGGGCACCTTCTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060397:ENSMUST00000144578:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types