BtaINT0166155 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011940 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr13:57719546-57724296:-
Coord C1 exon
chr13:57720784-57724296
Coord A exon
chr13:57719686-57720783
Coord C2 exon
chr13:57719546-57719685
Length
1098 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
AGTATCACTGGTATTTTCAGCTC
3' ss Score
3.89
Exon sequences
Seq C1 exon
ATGGATGTGCCAGAACTCGCCTGTCCTACCTCGCCTGCCAGGGACCAGCCGGCACCTGCTTCTGGCCCCCCAGGGGCCCCGGGTGGGCAGGCATCGCCTCACTTGACCCTGGGCCCCGTCATCCTGTCTCGGGAGCAGGGCCTGGCCCCCACCGTGTTCCTGAAGGCCCTGCCCATCCCGCTGTACCACACAGTGCCTCCGGGAGGGCTCCAGCCACGTGCTCCCCTCGTGACAGGCAGTCTGGACGGGGGCAGCCTGCCCTTCCTTCTCGGCCCCCTGCTGCAGCCTGAAGGGCTTGGTCCCACCCGAGCAGGGAAGCCGGTGGCCCCGGGGCTCACAGTGAACATCGTGGGTGCTCTGCCCATCCTGTCACCGGGCCTGGGGCCCGCTCTGGGCAGCCCAGGCAAGGTGCGCAACGCTGGCAGGTACCTGTGCCCACACTGCGGCCGGGACTGCCTGAAGCCCAGCGTTCTGGAGAAGCACATTCGGTCCCACACAGGGGAGCGGCCCTTCCCCTGCGCCACCTGCGGCATTGCCTTTAAGACCCAGAGCAACTTATATAAGCACAGACGGACCCAGACACACCTCAACAACTCCAGACTCTCTTCGGAGTCTGACGGTGGAGGGAGCAGCCTCCTAGAGGAAGGTGAAAAGGCTGCTGAGCCCACGGGGGCCGACCGGGCGCTATCACAAAGACCCCTTTCTCCCGGCACCCACGCCGCTGGGCACTGCCCAGTGCCCACCGTGCATGTGTCCCTGGTTGCCAAGAACCTGGATCGGAAGTTGGACGCTGTTCCCTGTCGGGGGTCCACGTTTGATATCAAGGAGGCCCCTGTAGACTCTGCTCCCGGGCTCCCGCTGGCCAGCCCGCAGTCGAGGTGGAAGCTGCCAGAGCCTCGGTCCCCGACGGCCAGTAGGCCGAGCTCAGCGCTGCAGCAACAGCAGGTGGAGAAGCCTGGAGACTCCAAGCCCTCGGAGGGCCGGCTGCGGAAGTGCGAGAGCACCGACTCGGGCTACCTGTCCCGTTCGGACAGCGCGGAGCAGCCGCCGGCCGCCGGCAGCCCCCTGCACAGCCTGTCGGAGCACAGCGCCGAGTCCGAGGGCGAGGGCGGCCCCGGGCCCGGGCGCGCGGAGCGGGTGGCTGGTCTGGAGCTGGAGAAGAGGCGGCTGGAGGAACGCATCGCCAGGCTCATCTCGCACAACCAGGCTGTGGTGGACGACCCCCAGCTGGCACACGTGCGGCCCCGCAAGACGGTCCTGTCCAAGCAGGGTAGCATTGACCTGCCCATGCCTTATACCTACAAGGACTCCTTCCACTTCGATCTGCGGCCGCCGGGACCCGGGAGGCTGCCGGCCGCCCTGCGTGCCGCGCGCTCCACCTGCACGCCCCCGGACAGGGCACGCCCCCTCTTCTTCCACTCGGTCCCCACGCAGCTCTCCACTGGCACCGATTGCGTGCCAGTCACCAGGAGCAACTCACTGCCCTTCGTCGAGGGCACCGGGACGTGGCCGGAGCCGCCGGAACCCCGGGACTCCTGGCCCCAGAAGCAGAAACCTCTGAGCCCCAGGCCCACCCCGGCCCGCCTAGCTGATGCCCCCGGCGGGCACCCTCGGGCTCTAGTCAGACAGGCGGCGGTGGAGGACCTGCCGTGTCCCCTGACCGCAGATGCCCTGGCCCCCGTGGAGGACCCAGAGGGAAAGAGACCAGCTGCTGAGGAGGGGTCTGCCAGCAAGGGCCAGGCAGCTGCTAAGAAACGCGGCCAGAGGAAACTGAAGATGTTCTCACAGGAGAAGTGGCAAGTGTATGGGAAGGACACGTTCAAGAGCATCTACCAGAGAGCGAAAGCCAGTCACCGTGGAGGCAGGAAGGCTACCGAGGTGACAGTGGGCGGTGGGGCAGCGCTGGAGCGTCCTCTCCAGCAAGAGGCCTCAGGTGGTGGGGACACTGTTGTGGGGGCCAAGCCAGGGCCGTGGGCAAGTCCACCAGTCCTGGCAGGCCTCTTGGTGAGTGAGCCCCATAAGCAGAGGGAGACAGTGGCTGGAACAGGAGGCCCTGACCAGCTGGGCTCTAACAGGGCCGTCTCACCCCCAACCCTCAGCAGTGGAGAAGCCCTCTGTTTGGACAGCAAGAGCCCTCTGCTTCCTCCACATGAGGGCCCGGAGCTGGAGTGTCAGCAGTTCCCAGCATCTGGTCCCCTCAAAGGGGGTGACCTAGAGGCTCCCAGGCCAGACTCCAAGCTGGAAGGTGGCACCTGCGGTGGTGAGGGCACCAAGGAAACCTGTCAGCAGGCCCATGTGGTCCCGAGAGGGCCTGGTGGGAGCTCAGGAGAGCCCAAGGCCCTGGAGGACAAGCTCCCCTCAGAGAGGAAGAAGCTGAAGGTGGAGGAGCTAAGCTGCCAGGAGCTCCTGGGAGCAGGAGGAGAGATTCCTGGTGGCCCCATGCAGACTGCCTCACCACCACCTCAGAACCAGGACACTGACCCTGGGGAAAAGCCAGGGGGGCTGCCTGGAAGTGGCAACTCCACAGAGAGTGTCATATCTGGGAACCTGAGGTGGGAGGGTCCTCAAGACACGGAGCCTCCACCACGTCCCCCTGGGTGTCCCTCCCAACTGGCCTCCCACCCTCCGGCTCCTCACACCCTCACTGACTCGGTGGACATGGTCTTTCCTCCCCAGTACCTCCTCAGGTTTCCCCAGAGAGACACCCGCCCCCTGTCACCTCTCCCCCAGAAGCTGGACCAAGGCCAGGACTCTATCTGCAAGAGAAGGGGGCCTGAGGTACAGACATCCTTTGCCGAGTCAGGGCAGGGGGCCCTCCTGCCTCCCTGTCCTATCTCAGGCCAGGCCCCAGCTGGAGAAGACAGCTGCTGGAAATACCCCAGCTGGTCCAGGTCATGTGACCAGAGAAAGGGGCTACAGAGAGAGGAGAGGGGAGGCTTGAATGCTGGTATACCAATAGCCAGGGCCCTCAAGGGGTCAGCCTCCTTCTTGCCTGCCTCAATGTGTGAATCCTGGAGGAGTGGGACCCATGACACCCAAGAAATCTCCAGGAGCAACACTGTGGCGAGGGCCGGGCCCTCTGGGGGTGTCCTCAATTCCTGGGAACCCACTGGAGAGCTGGGGGCACCTTCTGAGAGTGCTACTCAAGCCCCTTCTTCAGGGTCTCTAGCCTGCTGCTCCCACCAGGCTGGCTCCTCTCTCTCGGCCAGCATGGCCCCCCACTGGCCTGAGTTGGCCTTGCGCACCAATGCAGAACCTGCCAGGAGCTGCGGGGTCCAGGGCTCTTTTCCATCGCTGAGGGCCGAGCCCCGGCTCACGTGGTGTTGCCTGAGCCGCAGCCTCCCCCTGCCAATGGAGCAGAAGGAGAAGGATGCTTCTGTGTACCTGGGCTTACATTTGCCTGGAGGTGGCCTCCAGGGTGAGGGTCCGGACGCCTGGCTGGTGAGCAAAACAGTGTCTGGAGCATGGACCAGGATACGCCCTGGAGATGGAGGGCAGATGCAGATGTCGAAG
Seq A exon
GTAATACCAGCTTTGCCCCAGGGCCCTGGGAGCCGAGGGAGGAAGTTTGGCAGGCAGGACTTGTGATAATGGAGAGAAAGTGTGAGGCCGTCTGGTATAGCCTCTGCTGTCCTGTAGAATGTCTTCTCAGCCCACTTCCAAGGGAGTGAATAGAGGCCCCAAGAGTAAAATAAAATGAAAGAAAATCATGAAAAAAAGAAGTTTCAAAGGAAAGTATAACTGTACCTACCACTCTGGGTGAGATCTTTTTCATAACAGGACATAAACTTTGACTAGGAGCTTCCTGGTAGCAGAGGCAAAAAGTAAAAATGAAATGCTGCTCAGGGGAGCTCCCTGGGTAGTCAACAATTATAAATCAGAAACCCTTACTGAGAGACAGACACCAGGAAAAAACTCTTCAAAAGAGAGCATTATCATTCCAGGGATTCCAGAAAAATAGTTGCTATAATCAGATTCGACTGATTCCTGAGTTTCCTGGGAGCAGTGGCAGAAAGGTTAAGGAGCTGAGTGCTCTAGAGGGTTGATTAATCCTTGGTGATTAAAAAGGCTTAGAGTCCCACCATTAGAGGGACCCCATGCACCTGGATTGTATCATCAAGGATCCTGTCCCACCCTGGGATGTCTTGGGCCAGCGTGACTGAAGAGGGTCCTGTAGCCTCTGTTCTAATTTAATCGTGTGGAACAACAGGGCCTGGGTCCCTGTAAGCAGAGCTTACAGGCTGCTCTCCCTGGTAGTACTGTCTTCATCCCAAGAGTGGTGGATTAGGAAAGATTGTGTTGGGCCTGAGAAAGGCGGAATCTAAAACCCAAGTTAGCCTCCTTCCTCCAAAAGGCAATCAGTTACTGGGAGTGGATTTTGCTGAAGGAGGGCAAGGAGACAGCCATGGTATCACCAAAGGTCAGGGCTTTCCTCTGTGGATCCAGCCCAGGCAGGTTCCAGAAGATTCTGCCCAGGAATGCACAGACCAGTTAGCAAGGCAGTATTTTGATGCCTGATTTCTCCGGGCAGGCGTCCTGTCTGCAGTGGGAGACCCCTCTGTGTTGTTCCCACCACAAGGGCTGTGAGCAATATGACGCCAGTATCACTGGTATTTTCAG
Seq C2 exon
CTCTCTGACCCAACAGCCCGAGGGATGCTGTCCCGGGACCGGGTGTCTGAGCCAGAGTGGAAGAAACGACGGTCTCGTAGAAGAGCGAAGATGCCTCGTGGGAGCAGCAGGTGGAAACATCTGAGCACCCACTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011940:ENSBTAT00000015842:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=NA C2=0.894
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTTCCATCGCTGAGGGC
R:
CAGATGTTTCCACCTGCTGCT
Band lengths:
355-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development