HsaINT0188514 @ hg19
Intron Retention
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:16167]
Coordinates
chr20:57766075-57771060:+
Coord C1 exon
chr20:57766075-57769812
Coord A exon
chr20:57769813-57770923
Coord C2 exon
chr20:57770924-57771060
Length
1111 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AACATGCTTGGTGTTTTCAGTTC
3' ss Score
6.33
Exon sequences
Seq C1 exon
ATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCCGCCAGAGCAGGGCCTGGCCCCCCCCACTGTGTTCCTGAAGGCCCTGCCCATCCCACTGTACCACACGGTGCCTCCCGGGGGCCTCCAGCCCCGCGCCCCGCTAGTGACGGGCAGCCTAGATGGGGGCAACGTGCCCTTCATACTCAGCCCTGTGCTGCAGCCTGAAGGGCCTGGCCCCACCCAGGTGGGGAAGCCGGCGGCCCCTACGCTGACGGTGAACATCGTGGGCACTCTGCCTGTCCTGTCGCCGGGCCTGGGCCCCACGCTGGGCAGCCCAGGCAAGGTGCGGAATGCGGGCAAGTACCTGTGTCCGCACTGTGGTCGCGACTGCCTGAAGCCCAGTGTTCTAGAGAAGCACATCCGGTCCCACACGGGTGAGAGGCCCTTCCCGTGTGCCACCTGCGGCATCGCCTTTAAGACCCAGAGCAATCTCTACAAGCACAGGCGGACGCAGACGCACCTCAACAACTCCCGGCTGTCCTCAGAGTCCGAGGGCGCCGGGGGCGGCCTCCTGGAGGAAGGGGACAAGGCCGGAGAGCCCCCCAGACCAGAGGGCAGGGGCGAGAGCAGGTGCCAGGGGATGCACGAAGGCGCCTCGGAGAGACCCCTTTCTCCGGGTGCCCACGTGCCCCTACTTGCCAAGAACCTGGATGTGAGGACCGAAGCTGCTCCCTGTCCAGGGTCCGCATTTGCCGACAGAGAGGCTCCTTGGGACTCTGCCCCCATGGCGTCACCTGGGCTCCCAGCGGCCAGCACACAACCCTGGCGTAAGTTGCCAGAGCAGAAGTCGCCGACCGCCGGGAAGCCGTGCGCCCTGCAGCGGCAGCAGGCGACGGCAGCGGAGAAGCCCTGGGATGCCAAGGCCCCCGAGGGCCGGCTGCGGAAGTGTGAGAGCACCGACTCGGGGTACCTGTCGCGCTCCGACAGCGCGGAGCAGCCGCATGCGCCCTGCAGCCCCCTGCACAGCCTTTCGGAGCACAGCGCCGAGTCCGAGGGGGAGGGCGGCCCGGGCCCGGGGCCAGGGGTCGCAGGGGCCGAGCCCGGGGCGCGAGAAGCCGGCCTGGAGCTGGAGAAGAAGCGGCTGGAGGAGCGCATCGCCCAGCTCATCTCCCACAACCAGGCGGTGGTGGACGATGCCCAGCTGGACAACGTGCGGCCCCGGAAGACCGGGCTGTCCAAACAGGGCAGCATCGACCTGCCCACGCCCTACACCTACAAGGACTCCTTCCACTTTGACATCCGCGCGCTGGAGCCAGGCCGTAGGAGGGCCCCGGGCCCCGTGCGCTCCACCTGGACGCCCCCAGACAAGTCTCGGCCCCTCTTCTTCCACTCCGTCCCCACTCAGCTCTCCACCACCGTGGAATGTGTCCCCGTCACCAGGAGCAACTCGCTGCCCTTCGTCGAGGGCTCCAGGACGTGGCTGGAGCCCAGGGAGCCCCGGGACCCCTGGTCCAGGACGCAGAAGCCTCTGAGCCCCAGGCCCGGCCCAGCCCGCCTGGGCTGCCGCTCGGGACTAAGCTCGACTGACGTTCCCAGTGGGCATCCCCGGGCCCTGGTCAGACAGGCCGCGGTGGAGGACCTGCCAGGCACCCCCATTGGCGATGCCCTGGTGCCCGCAGAGGACACAGACGCAAAGAGAACTGCTGCGCGGGAGGCCATGGCCGGCAAGGGCAGAGCGGGCGGCAGGAAGTGCGGCCAGAGAAGGCTGAAGATGTTCTCCCAGGAGAAGTGGCAGGTGTACGGGGATGAGACGTTCAAAAGGATCTACCAGAAAATGAAAGCCAGTCCCCATGGAGGCAAGAAAGCCAGGGAGGTGGGAATGGGCAGTGGGGCAGAACTGGGCTTTCCTCTGCAGAAAGAGGCAGCAGGGAGCTCAGGCACAGTCCCCACCCAAGACAGGAGGACCCCTGTCCATGAGGACATATCCGCAGGGGCAACGCCAGAGCCTTGGGGAAATCCACCAGCCCTGGAGGCCTCCTTGGTGACTGAACCCACTAAGCATGGGGAGACGGTGGCCAGGAGAGGAGACAGTGACCGACCCAGGGTGGAAGAGGCTGTGTCATCCCCTGCACTGGGTGGCAGAGACAGTCCCTGTTCAGGCAGTAGGAGCCCCCTGGTCTCTCCAAATGGGAGGCTGGAACTGGGGTGGCAGATGCCCCCAGCACCTGGCCCCCTCAAAGGGGGTGATGTAGAGGCTCCCAGGCCAGTTTGGCCGGACCCCAAGCTGGAAGGAGGTGCCCGAGGTGTGGGGGATGTTCAGGAGACCTGCCTGTGGGCCCAGACTGTCCTGAGATGGCCCAGCAGGGGCTCAGGGGAGGACAAGCTCCCCTCAGAGAGGAAGAAGCTGAAAGTGGAGGACCTGCACAGCTGGAAGCAACCAGAGCCTGTGAGCGCAGAGACCCCAGGTGGGCCCACGCAGCCTGCCTCTTTGTCATCCCAGAAGCAGGATGCCGATCCCGGGGAGGTGCCAGGGGGCTCAAAGGAGAGTGCCAGGCAGGTGGGCGAGCCTCTGGAGTCCTCTGGAGCCTCCTTGGCTGCTGCTTCTGTTGCCCTGAAGAGGGTGGGGCCAAGGGACAAGGCTACCCCACTGCATCCTGCAGCCCCAGCCCCCGCAGAGCACCCCTCGCTGGCCACCCCACCTCAGGCTCCTAGAGTGCTCTCTGCCCTGGCAGATAATGCCTTTTCCCCCAAGTACCTCCTCAGGTTACCTCAGGCAGAGACCCCCTTACCACTGCCCATTCCCTGGGGACCAAGGCACAGCCAGGACTCTCTCTGCAGCAGTGGGTGGCCTGAAGAACGGGCATCATTTGTTGGGTCAGGACTGGGGACCCCTCTTTCTCCCAGCCCAGCCTCAGGCCCCTCCCCAGGTGAGGCGGACAGCATCCTGGAGGACCCCAGCTGTTCCAGGCCACAGGATGGGAGAAAAGGGGCACAGTTGGGGGGGGACAAGGGGGACAGGATGGCCACTAGCAGGCCAGCAGCCAGGGAGTTGCCCATCTCAGCACCAGGGGCTCCCAGGGAGGCTACCTCCTCCCCGCCCACTCCAACGTGTGAGGCACACTTAGTTCAGGACATGGAGGGTGACAGCCACCGTATCCATCGCCTCTGCATGGGCAGCACTTTGGCAAGGGCCAGGCTCTCTGGGGATGTCCTGAATCCCTGGGTACCCAACTGGGAGCTGGGGGAGCCTCCTGGGAATGCCCCAGAAGATCCTTCTTCAGGGCCCCTGGTGGGCCCCGACCCGTGTTCCCCCCTCCAGCCTGGCTCCTTCCTCACTGCCCTCACTCGGCCTCAGGGTGTGCCCCCAGGCTGGCCAGAGCTGGCCTTGTCTTCCCACTCAGGGACGTCCCGGAGCCACAGCACCCGCAGTCCCCACAGCACCCAAAACCCCTTTCCCTCACTGAAGGCTGAGCCGCGGCTCACGTGGTGTTGCCTGAGCCGCAGTGTCCCTCTGCCCGCGGAGCAGAAGGCAAAGGCGGCATCTGTGTACTTGGCGGTGCACTTTCCTGGTAGCAGCCTCCGAGATGAGGGTCCCAATGGCCCTCCTGGGAGCAATGGAGGATGGACCTGGACAAGCCCTGGAGAAGGAGGGCCGGCGCAGATGTCCAAG
Seq A exon
GTAAAGCTGGGCTTTGCCCCAGGGCCCGGGGTTGAGAGAGCATGTTGTTATCCCGTAAGACCTCTCATGAGGGAAGGAAGTCTGAAGCCGTCCCATGTAGCATCTGCTGTTCACTGCTTGCTTGTTCCTGAGGGAGGCTGGGGATACCACATAGACAGCAGGAAGGAATAAAGGCCCAAATGCAAACCAAAACAGAGTTGCGGAAAACATAAATTCCAAAGGAAAGAATTACTGTACTCAAGACATGAGGTGAGATAGTCTTCATAACCAAATGTAAAATTTAACTGAGCTTCCTGGTAACAGAAGCAAAAAGTAAAATGAAACACTCCATCAGAGAGGTGAGCTCTCTGGATCATTCTAAGATTATAAGCCAGAGACTCCCAATAATTGAGAGAGTCTTTATACTGGGGATTCTGGAGAAGGAATTACTGTTGATTGGACTCAGCCCTCTCTCTGAGGTTCCTGGGGGCAGAGAGAAAAGGGGGAAATGTGGTGGATGCTCACAGGTGTTCTCACTTGGTGAAGAAATGATAATGCAGAGCTCCACCTTGAGAGGGGGTTCACGCACCTGGTTGTGATGACTGAGGGCTTAGTCCTGCTCTGGAGTGGCTTGGGCCGCGGCCACTGAGGACGGTCCTGGAGGCTCAGCAGTCATTTAACCTTTGTGGACAGTGACAAAGGCCCGGAGACCAGAGTCTTGCAGGCTGTTCGGCTTTCCCTAGGTGGAACCCAAAGTTGTGGGGAGTGCTGTTTTCATCTTGAGAGTAGCGGGTTAGTCAGTAGGGCCCCAGGGGTGTGGGGGCTCCCGGGGAGGTGGATTTAGGGGATAGTAAAGGGGCTGGTCACCGTGTTTCTTTGGCCTCCAGTTAACACCGATGGCATAGGCTTTCCTCTGCGGATCAAGCCCAGGCGGGGTTTCAGGAGGTTCTGTCCAGGAACGCTCTGCCGTTGCCTGGTTGAACTTCTCAGGGGCTCAGCCCGTTTAGCAATGCAGTATTTCCGTTTTGATTTCTGAAGACAGGCATCTTGTCTGCAGAGCGAGAACCCTTTGGAGTTTTCTTCATCATGAGGACTTTGAGTAATGTGATGCCAACATGCTTGGTGTTTTCAG
Seq C2 exon
TTCTCCTACCCAACAGTCCCAGGGGTGATGCCCCAGCACCAGGTGTCTGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGATGTCTCGTGGGAACAGCAAGCAGAGAAAACTGAAGATCAACCCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203-ZNF831:NM_178457:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAACCCCTTTCCCTCAC
R:
TTCTCTGCTTGCTGTTCCCAC
Band lengths:
345-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)