MmuINT0179960 @ mm10
Intron Retention
Gene
ENSMUSG00000050600 | Zfp831
Description
zinc finger protein 831 [Source:MGI Symbol;Acc:MGI:3641861]
Coordinates
chr2:174643534-174648223:+
Coord C1 exon
chr2:174643534-174647172
Coord A exon
chr2:174647173-174648080
Coord C2 exon
chr2:174648081-174648223
Length
908 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
AACATGCCTGGTATTTTCAGCTT
3' ss Score
5.27
Exon sequences
Seq C1 exon
ATGGAGGCGTCAGAACCGACCCACCCTACCCCATCGGCCACGGACCAGCCAGCCTCTGTACCCGGCATTCCAGGGGGCCTAGGGGGGCAGGCCTCACCTCGCCTGACCCTGGGTCCTGTTATCCTGCCACCAGAGCAGGGCCTGGCCCCAACTGTGTTCTTGAAGGCATTGCCTGTCCCCTTATACCACACGGTACCTCCTGGGGGCCTCCAGCCACGTGCACCCCTGGTGACAGGCAGCCTGGAGGGGGCCAGCGTACCTTTCATTCTCAGCCCCTTGCTGCAGCCTGAAGGACCCAGTGCCACCCAGGTGGGCAAGCCAGCCACCCCCGCCCTGACTGTGAACATTGTAGGCACATTGCCTGTACTCTCCTCGGGTGTGGGGTCTGCACTGGTCAGCACAGGCAGAGTGAAGAATACTGGTAAGTACCTGTGCCCCCACTGTGGCCGGGACTGCTTGAAGCCCAGTGTGCTGGAGAAACACATCCGGTCCCACACAGGTGAAAGGCCCTTCCCGTGCCCTACCTGTGGCATCGCCTTTAAGACCCAGAGCAACCTGTATAAACACAGGCGGACACAAACACATCTCAACAACTCCCGCTTGTCCTTGGAGTCTGAGGGGAGTGGGAGCAGCCTTCTGGAGGAGGGAGACAGGCCCGGAGAGACCGCCTCAGTGGATAGTCGTGGAGATGAAGGTGCTCCAGAGAGAGCCCTTTCCCCAGGTGCCCTCCCCGCCCTTGCTGCTCAGAACAGGGAAAGGAAGGTGGAATCGGCTCCCTCTCTCGGGGCCACCCTTTCCCACAGGGAGGCCTCTGCGGATCACACTCAGATGGTGTCACCTGAGTTTTCACTAGCCAGCCCGCAGCCTAGGCGGAAGCTGCCAGAACCAAAGCCATGCTTCCTGCAGCGACAGCAGGAGACCTGTTCAGAGAAGCCCTGGGACCCCAAGGCCTTGGAGGGCCAGCTGAGGAAGTGTGAGAGCACAGACTCTGGCTACCTGTCGCGCTCAGACAGCGTGGAGCAGCCCCCTGTTGCCTCTAGCCCATTGCATAGTCTATCGGAGCACAGTGCGGAGTCTGAGGGGGAAGGAGGCCCTGGCTGTTCCTCTTCCGGCAACAGGGCTGAACGAGGAACCCCAGGGCCCAGCCTGGAGTTAGAGAAGAAGAAACTGGAGGAACGAATTGCCCAGCTCATCTCCCACAACCAGGCGGTGGTAGATGACCCACAGTTGGACCATGTGCGGCCCCGCAAGACTGTGCTGTCCAAGCAGGGCAGCATCGACCTGCCCATGCCATATACCTACAAGGATTCCTTCCACTTTGACATCCGGGCTCTGGAGCCCAGCCGCAGGAGGGCTGCCCTCAGCCCGGCCCGCTCCACCTTCACACCCCTGGAAAAGGCCAGACCTCTCTTTTTCCACTCAGTCCCCACGCAGCTCTCCACTACAGTGGAGTGTGTCCCTGTCACCAGAAGCAACTCGCTGCCTTTCGTCGAGGGTTCTAAGTTGTGGCCAGAGCAACGGGACCCACAGGATGCTGTCCCAGGAATGCAGAAGGCCCTGAGCCCCAGGCCCACCCCAGCCCGGCTGGGATGCCGCCCAGGACTGACCTTGGCAAGCATCTCCAGTGGTCACCCACGGGCCCTGGTAAGACAGGCTGCTGTGGAGGACCTGCCGTGTACCCCGACTGGAGACCCTTCAGCCGCTGCTGAGGAACTAGATGGAAAGAGAGCTGTGGCAAAGGAGGGTGTGGTGTACAAGGGCAGAGCCAGTAAAAAGTGTAGCCAGAGGAAGCAAAGGATGTTCTCCCAGGAGAAATGGCAAGTGTATGGAAATGAGACTTTCAAGAGAATATACCAGAAAATGAAGACCAACCACCAGGGAGGACAGAAACACAGGCAGGTGAAACAGGGCCAGGGGACAGAACTGGACTTTCCTCCTCCTCCTCCTCCTCAGAAACAGGGGGGAGGAGGTGAGGATACAGGCCTGTCTCAAGACAGTAGGATCCCTATCCTTGGAGACACTACAGCAGGATGTAAGCTAGAGTCTTGGGGAAGTAGACCATCCCTGGAAGACTCACTGGAGGCTGAGTCTCCTAAGCAACTGAAGGTGGTGACCAGAGTCAAATCATCTCCTACCCTCGGCAGCACAGATAGCCTCTGTTTGAGTGGCAAGAGCTCTTTGCTCTCTCCAAGTGGGAAATTAGATCTGGGATGCCAGCCGCCTCCGGTGCCTACGGCTTGCCAAGCAGGAGATTTAGAAGCTCCCGAGACTGCTTCACCAGACTCAAGTGGTGAGGCTATAAAAGAAACCAGCCCTGGAGCCCAAACCGTCCTCAGACGGTCCAGTGATGGGTCTGTGGCTCTACAGCTTGCAGAAGACAAGTTACCTTCAGAGAGGAAGAGACTGAAGGTGGAAGGGCTGGACCATCAGGAGCAGCCAGGGCCTCTGGAAGCTGATACCTCAGGAGGCTCTGTGCAGGCTGACCCCCCACCGTCCGAGAGACAGGACAGTGACTCTGAGGAGTTGCTGGGTTGCTCAAATAAGAGTACCCTGCATGTGACCACAGCCCCGGAGCCCTCAGATGTCTCCTCAGCCGCTTCTCCTGTTGCCCTGCAATGGCCAGGGATAGGGGACAAGGATTCCCCATTGCCTTCTGTACCCAGGACTCCTGGGCTTCACTCCCTCTTGCCTGCTCAGCCCCAGGATCCTGGTGTCCCTAATGCTCGGTCAGGTGGCTTCTTTCCTCCCAAGTACCTCCTCAGGTTACCTCAGGGAGAGAACCCCTCACCGATAGTTGCTGCAGGGCCTGAAAAAGGCTCAGACTCTCTGTGTACAAGTACACAGCCTGTAGAACAGGCCCTTCTGGTTGGATCAGAACTCGGAATGCTCCGGCCACCTGGTGCATACTCAGGCCCAGGTGAGGCAGGTGGCAGCCCAGACGACCCTAGCTGGTCCAGGTTAAGGGATGGAAAAGAAGAGGCACAGACAGGAAGAGAGAAAAGAGATAGGACCAAGGACAACATCCTAGTGGTTGGGCACTCTCCTGTTCCAATTACCAGCACCACCCAGGAGATAGCCTCCGTTCTGTCTACTCACACCTGTGACATTCGGGTGGCCCAGGATGTAGTGAGTAAGACCCATGCCATCCATTGCCTCTGCACAGACAGCCCACCAGCAAGAGCTAGGACATATGGGAATCTCTTAAACCCTTGGACATCATCCCAGAAGCTGGGGATACCGCCCAAGAGTGCCCTAGAAGGTCCTCCTTCAGAAACCAAGGAAGGGCTGCCTGCTTTCTTTTCCTCTCAAGCACACTATTTCCTTACAACTTTTACAAAACCCCAGGATATTTCCTTGAACCAGCAGAAACCGGCCTTGTCACACGTCTTAGGAACCCCCAGGAGCTGTGAGGCCCCAAGCTCCTTCCCCTCACTTAAGACTGAACCCCAGCTCACATGGTGTTGCTTAAGTCGAAGCCTGCCCCTGCCTGCAGAGCAGCGGAGGATAGCTCCTGGACACTTGGCTTCATCCTTGCCTAATAGAAACCTCCAGGGCGACAGTAACAAAACACTACCCAAGAGCAATGGAGGAAGGACCCAGACAAGCCAAGGAGGAGAAGTGTCTACACAGGCGCCTGAG
Seq A exon
GTAACACCAGCTTGTCCTGGGGACAGGGTCAGCATGACAGTGAGACACGAAGAACAAGAGAGAGGGAGAGGAGAGAGAGAGAGCTCCTGAATCTATCCTTGTGGATATCACCTCCATTAGGAGGTCCTCTGCTGCCAAGAGAGGCTAGCGCTGTCATACATGGGCTGGGAAAAAATAAAGGCCCTAGATATGAACAAAACTAAACAAATTCATGAAAATAACATAGTAAAAAACTATTCTACTAGAGTCTGAGTCATAGCTGAGTTGGTAAAGTACTTGCCATACAACCATGAGGGCCAGAGAATCCACAATTAAAAAGCCAAGTAGGATGGCAGGCCATTCTAACCCCAGCACTGGGGAGATGGTCTCTGGGGGCTTAGATTAGCCTAGCCAGTGAGTCTCAGACCAGTGGGAGACCCTGGCTCAAAATATAAGCTGGATGGCTTCTGAGAAATGACACTCAAGATTGTTCTCTAGCCTCCACATGTGTGTGTACATGCACACATACACACACATATGCACACACACTACACCTGAGACTTGAAAGCATTCTTGCTTCTCTCCAGGGACTAAGGGTGAGGATCCAAGGTGTGATTTAAATCTTCCCCTTCGAAATTGTAGGGATTCCTGAGTGGTAGAACTATGGATGATGGTTAATTCTCCACTCACATCAAAGGTCCAGCATTTCCACTGGAAATCCAGCTAGGTATAGTTCTGGATGGTTCCATGTGACACATTACCAGTTGCCTGGTAAGAGTACTGAACAGGCTCAGACTATTTAGTAACAACATTTTGGTGTCTTAATTTCTATAGAATAGGCATCCTGTCTGTTGAGAAAGAGCCCATCATGGTGGTCCCCACCATGAGGGCTTTGAGTGACATGATGCCAACATGCCTGGTATTTTCAG
Seq C2 exon
CTTCCCTATCCATCAGTCCCAGAGCTGAGGGCTGAGGACCAAGTATCCAGGCCACGGTGGAAGAAAGAACAACTATGGCGTAGAAAGGTGAAGACATCTCGTGAAAACACCAAACAGAAGAAACTGAGGCTTCATTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050600:ENSMUST00000059452:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.861
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGAACCAGCAGAAACCG
R:
TGGCCTGGATACTTGGTCCTC
Band lengths:
342-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types