HsaINT0188514 @ hg38
Intron Retention
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr20:59190984-59196005:+
Coord C1 exon
chr20:59190984-59194757
Coord A exon
chr20:59194758-59195868
Coord C2 exon
chr20:59195869-59196005
Length
1111 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AACATGCTTGGTGTTTTCAGTTC
3' ss Score
6.33
Exon sequences
Seq C1 exon
GTTTTCCAGCATTGTGGGCCATCCAGATGATGCGGAATGGAGGTTCCAGAACCCACCTGCCCTGCCCCTCCTGCGAGGGACCAGCCAGCTCCCACTCCTGGCCCTCCAGGGGCCCCAGGTGGCCAGGCCTCACCTCACCTGACCCTGGGCCCTGTCCTTCTGCCGCCAGAGCAGGGCCTGGCCCCCCCCACTGTGTTCCTGAAGGCCCTGCCCATCCCACTGTACCACACGGTGCCTCCCGGGGGCCTCCAGCCCCGCGCCCCGCTAGTGACGGGCAGCCTAGATGGGGGCAACGTGCCCTTCATACTCAGCCCTGTGCTGCAGCCTGAAGGGCCTGGCCCCACCCAGGTGGGGAAGCCGGCGGCCCCTACGCTGACGGTGAACATCGTGGGCACTCTGCCTGTCCTGTCGCCGGGCCTGGGCCCCACGCTGGGCAGCCCAGGCAAGGTGCGGAATGCGGGCAAGTACCTGTGTCCGCACTGTGGTCGCGACTGCCTGAAGCCCAGTGTTCTAGAGAAGCACATCCGGTCCCACACGGGTGAGAGGCCCTTCCCGTGTGCCACCTGCGGCATCGCCTTTAAGACCCAGAGCAATCTCTACAAGCACAGGCGGACGCAGACGCACCTCAACAACTCCCGGCTGTCCTCAGAGTCCGAGGGCGCCGGGGGCGGCCTCCTGGAGGAAGGGGACAAGGCCGGAGAGCCCCCCAGACCAGAGGGCAGGGGCGAGAGCAGGTGCCAGGGGATGCACGAAGGCGCCTCGGAGAGACCCCTTTCTCCGGGTGCCCACGTGCCCCTACTTGCCAAGAACCTGGATGTGAGGACCGAAGCTGCTCCCTGTCCAGGGTCCGCATTTGCCGACAGAGAGGCTCCTTGGGACTCTGCCCCCATGGCGTCACCTGGGCTCCCAGCGGCCAGCACACAACCCTGGCGTAAGTTGCCAGAGCAGAAGTCGCCGACCGCCGGGAAGCCGTGCGCCCTGCAGCGGCAGCAGGCGACGGCAGCGGAGAAGCCCTGGGATGCCAAGGCCCCCGAGGGCCGGCTGCGGAAGTGTGAGAGCACCGACTCGGGGTACCTGTCGCGCTCCGACAGCGCGGAGCAGCCGCATGCGCCCTGCAGCCCCCTGCACAGCCTTTCGGAGCACAGCGCCGAGTCCGAGGGGGAGGGCGGCCCGGGCCCGGGGCCAGGGGTCGCAGGGGCCGAGCCCGGGGCGCGAGAAGCCGGCCTGGAGCTGGAGAAGAAGCGGCTGGAGGAGCGCATCGCCCAGCTCATCTCCCACAACCAGGCGGTGGTGGACGATGCCCAGCTGGACAACGTGCGGCCCCGGAAGACCGGGCTGTCCAAACAGGGCAGCATCGACCTGCCCACGCCCTACACCTACAAGGACTCCTTCCACTTTGACATCCGCGCGCTGGAGCCAGGCCGTAGGAGGGCCCCGGGCCCCGTGCGCTCCACCTGGACGCCCCCAGACAAGTCTCGGCCCCTCTTCTTCCACTCCGTCCCCACTCAGCTCTCCACCACCGTGGAATGTGTCCCCGTCACCAGGAGCAACTCGCTGCCCTTCGTCGAGGGCTCCAGGACGTGGCTGGAGCCCAGGGAGCCCCGGGACCCCTGGTCCAGGACGCAGAAGCCTCTGAGCCCCAGGCCCGGCCCAGCCCGCCTGGGCTGCCGCTCGGGACTAAGCTCGACTGACGTTCCCAGTGGGCATCCCCGGGCCCTGGTCAGACAGGCCGCGGTGGAGGACCTGCCAGGCACCCCCATTGGCGATGCCCTGGTGCCCGCAGAGGACACAGACGCAAAGAGAACTGCTGCGCGGGAGGCCATGGCCGGCAAGGGCAGAGCGGGCGGCAGGAAGTGCGGCCAGAGAAGGCTGAAGATGTTCTCCCAGGAGAAGTGGCAGGTGTACGGGGATGAGACGTTCAAAAGGATCTACCAGAAAATGAAAGCCAGTCCCCATGGAGGCAAGAAAGCCAGGGAGGTGGGAATGGGCAGTGGGGCAGAACTGGGCTTTCCTCTGCAGAAAGAGGCAGCAGGGAGCTCAGGCACAGTCCCCACCCAAGACAGGAGGACCCCTGTCCATGAGGACATATCCGCAGGGGCAACGCCAGAGCCTTGGGGAAATCCACCAGCCCTGGAGGCCTCCTTGGTGACTGAACCCACTAAGCATGGGGAGACGGTGGCCAGGAGAGGAGACAGTGACCGACCCAGGGTGGAAGAGGCTGTGTCATCCCCTGCACTGGGTGGCAGAGACAGTCCCTGTTCAGGCAGTAGGAGCCCCCTGGTCTCTCCAAATGGGAGGCTGGAACTGGGGTGGCAGATGCCCCCAGCACCTGGCCCCCTCAAAGGGGGTGATGTAGAGGCTCCCAGGCCAGTTTGGCCGGACCCCAAGCTGGAAGGAGGTGCCCGAGGTGTGGGGGATGTTCAGGAGACCTGCCTGTGGGCCCAGACTGTCCTGAGATGGCCCAGCAGGGGCTCAGGGGAGGACAAGCTCCCCTCAGAGAGGAAGAAGCTGAAAGTGGAGGACCTGCACAGCTGGAAGCAACCAGAGCCTGTGAGCGCAGAGACCCCAGGTGGGCCCACGCAGCCTGCCTCTTTGTCATCCCAGAAGCAGGATGCCGATCCCGGGGAGGTGCCAGGGGGCTCAAAGGAGAGTGCCAGGCAGGTGGGCGAGCCTCTGGAGTCCTCTGGAGCCTCCTTGGCTGCTGCTTCTGTTGCCCTGAAGAGGGTGGGGCCAAGGGACAAGGCTACCCCACTGCATCCTGCAGCCCCAGCCCCCGCAGAGCACCCCTCGCTGGCCACCCCACCTCAGGCTCCTAGAGTGCTCTCTGCCCTGGCAGATAATGCCTTTTCCCCCAAGTACCTCCTCAGGTTACCTCAGGCAGAGACCCCCTTACCACTGCCCATTCCCTGGGGACCAAGGCACAGCCAGGACTCTCTCTGCAGCAGTGGGTGGCCTGAAGAACGGGCATCATTTGTTGGGTCAGGACTGGGGACCCCTCTTTCTCCCAGCCCAGCCTCAGGCCCCTCCCCAGGTGAGGCGGACAGCATCCTGGAGGACCCCAGCTGTTCCAGGCCACAGGATGGGAGAAAAGGGGCACAGTTGGGGGGGGACAAGGGGGACAGGATGGCCACTAGCAGGCCAGCAGCCAGGGAGTTGCCCATCTCAGCACCAGGGGCTCCCAGGGAGGCTACCTCCTCCCCGCCCACTCCAACGTGTGAGGCACACTTAGTTCAGGACATGGAGGGTGACAGCCACCGTATCCATCGCCTCTGCATGGGCAGCACTTTGGCAAGGGCCAGGCTCTCTGGGGATGTCCTGAATCCCTGGGTACCCAACTGGGAGCTGGGGGAGCCTCCTGGGAATGCCCCAGAAGATCCTTCTTCAGGGCCCCTGGTGGGCCCCGACCCGTGTTCCCCCCTCCAGCCTGGCTCCTTCCTCACTGCCCTCACTCGGCCTCAGGGTGTGCCCCCAGGCTGGCCAGAGCTGGCCTTGTCTTCCCACTCAGGGACGTCCCGGAGCCACAGCACCCGCAGTCCCCACAGCACCCAAAACCCCTTTCCCTCACTGAAGGCTGAGCCGCGGCTCACGTGGTGTTGCCTGAGCCGCAGTGTCCCTCTGCCCGCGGAGCAGAAGGCAAAGGCGGCATCTGTGTACTTGGCGGTGCACTTTCCTGGTAGCAGCCTCCGAGATGAGGGTCCCAATGGCCCTCCTGGGAGCAATGGAGGATGGACCTGGACAAGCCCTGGAGAAGGAGGGCCGGCGCAGATGTCCAAG
Seq A exon
GTAAAGCTGGGCTTTGCCCCAGGGCCCGGGGTTGAGAGAGCATGTTGTTATCCCGTAAGACCTCTCATGAGGGAAGGAAGTCTGAAGCCGTCCCATGTAGCATCTGCTGTTCACTGCTTGCTTGTTCCTGAGGGAGGCTGGGGATACCACATAGACAGCAGGAAGGAATAAAGGCCCAAATGCAAACCAAAACAGAGTTGCGGAAAACATAAATTCCAAAGGAAAGAATTACTGTACTCAAGACATGAGGTGAGATAGTCTTCATAACCAAATGTAAAATTTAACTGAGCTTCCTGGTAACAGAAGCAAAAAGTAAAATGAAACACTCCATCAGAGAGGTGAGCTCTCTGGATCATTCTAAGATTATAAGCCAGAGACTCCCAATAATTGAGAGAGTCTTTATACTGGGGATTCTGGAGAAGGAATTACTGTTGATTGGACTCAGCCCTCTCTCTGAGGTTCCTGGGGGCAGAGAGAAAAGGGGGAAATGTGGTGGATGCTCACAGGTGTTCTCACTTGGTGAAGAAATGATAATGCAGAGCTCCACCTTGAGAGGGGGTTCACGCACCTGGTTGTGATGACTGAGGGCTTAGTCCTGCTCTGGAGTGGCTTGGGCCGCGGCCACTGAGGACGGTCCTGGAGGCTCAGCAGTCATTTAACCTTTGTGGACAGTGACAAAGGCCCGGAGACCAGAGTCTTGCAGGCTGTTCGGCTTTCCCTAGGTGGAACCCAAAGTTGTGGGGAGTGCTGTTTTCATCTTGAGAGTAGCGGGTTAGTCAGTAGGGCCCCAGGGGTGTGGGGGCTCCCGGGGAGGTGGATTTAGGGGATAGTAAAGGGGCTGGTCACCGTGTTTCTTTGGCCTCCAGTTAACACCGATGGCATAGGCTTTCCTCTGCGGATCAAGCCCAGGCGGGGTTTCAGGAGGTTCTGTCCAGGAACGCTCTGCCGTTGCCTGGTTGAACTTCTCAGGGGCTCAGCCCGTTTAGCAATGCAGTATTTCCGTTTTGATTTCTGAAGACAGGCATCTTGTCTGCAGAGCGAGAACCCTTTGGAGTTTTCTTCATCATGAGGACTTTGAGTAATGTGATGCCAACATGCTTGGTGTTTTCAG
Seq C2 exon
TTCTCCTACCCAACAGTCCCAGGGGTGATGCCCCAGCACCAGGTGTCTGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGATGTCTCGTGGGAACAGCAAGCAGAGAAAACTGAAGATCAACCCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203:ENST00000637017:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=NA C2=0.886
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAACCCCTTTCCCTCAC
R:
TTCTCTGCTTGCTGTTCCCAC
Band lengths:
345-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains