BtaINT0166313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014834 | ZP3
Description
Bos taurus zona pellucida glycoprotein 3 (sperm receptor) (ZP3), mRNA. [Source:RefSeq mRNA;Acc:NM_173974]
Coordinates
chr25:34962843-34963904:+
Coord C1 exon
chr25:34962843-34962961
Coord A exon
chr25:34962962-34963800
Coord C2 exon
chr25:34963801-34963904
Length
839 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
AGCTGCTTGTCTCTTCCTAGGCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTGACCGACAATGCCCTGGTGTACAGCACCTTCCTGCTCCACAACCCCCGCCCTGCAGGAAACCTGTCCATCCTGAGGACTAACCGCGCAGAGGTCCCCATCGAGTGCCACTACCCCAG
Seq A exon
GTCTGTGTGGCCGCCCCTGGCCCAGAGGCCCCTCGGCAAGCATGTCAGCCTCCTGGCAGCACCTGGCAGTGAGGCTGTGAGGACGGAGGAAAGGCTGGGGCTGTCGTCGCTGCCCTCAGTCCTGGTGGGGGTGGGCGTGGCCCTGTGGCCTCTGCTCAGAGCCCCTGAAACCGGCCAGCCCACAGCTGCCTCCTGGGGGAAGCTGCAGGGCTGCCCTGCCCCCTCAGTTCAGAAAGGCTCGCTCAGTAGAGCAGAAGTGGGTTCCAAGCTCTGACCTTGACCTTGGCCATCACAACCTGCACTCTGTAGCTGAGTGAGGGTGGGGGAGGCCCCAGCACGAAGCATGAGCCTGTGACCTTGGAGCATCAAGGGTTGGGGACCGAGTGACTGGCTTACAACTACAAGGCCTGGCCCTGTGTGCTGGGTTGAGTGCAAAGTAAAAGTCGTTCAGTCGTGTCCAGCTCTATGCGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCTATGGAGTTCTCCAGGCAAGAATACTGCAGTGGGTTGCCATTCCCTTCTGCAAGAGATCTTCCCAACCCAGCAATCAAACCCAGGTCTCCCGCATTGCAGGCGGATTCTTTGAGCCATCAGGGACGTCTAGGAAGGCTTTGAACTTGACTCTGATCTGGGAGGGGAGATGGTGTTGATACGATGAAGGAACAAGGCATGTGTGGAAGGGCCTCCCCGGACAAGATCCGGGGGGGGCGGTGCTCAGGCAGGTGGGCAGACACACCCAGAGGACAGTGTCTCTAGTAGGGCCCAGAGCCGAAGGCCAGGTGTGGGCAGCTGCTTGTCTCTTCCTAG
Seq C2 exon
GCAGGGCAATGTGAGTAGCTGGGCCATCCAGCCCACCTGGGTGCCATTCAGGACCACAGTGTTCTCGGAGGAGAAGCTGGTTTTCTCTCTGCGCCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014834:ENSBTAT00000019756:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.1=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCGACAATGCCCTGG
R:
CTCCATCAGGCGCAGAGAGAA
Band lengths:
222-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]