RnoINT0169354 @ rn6
Intron Retention
Gene
ENSRNOG00000001434 | Zp3
Description
zona pellucida glycoprotein 3 [Source:RGD Symbol;Acc:620606]
Coordinates
chr12:23739733-23741459:-
Coord C1 exon
chr12:23741341-23741459
Coord A exon
chr12:23739837-23741340
Coord C2 exon
chr12:23739733-23739836
Length
1504 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGCTGTCTTTTTTCCACAGGCA
3' ss Score
12.27
Exon sequences
Seq C1 exon
GTGACAGAAGACGCCCTGGTGTACAGCACCTTTCTGCTCCACGACCCTCGCCCTGTGAATGGCCTGTCTATCCTAAGGACTAACCGGGTGGAGGTCCCCATTGAGTGCCGATACCCCAG
Seq A exon
GTCAGTGTGGAATGGATGAGCTGCTGGGTTCCTGGATTTGGAATATGGCTGCCTGCAAGGAGGAAGTTTGCTCTGACAAGGGTGCTTTTCTGCAGCTGTGCTGATTATTGTCCCATGTGTGAATGGTTAGACAGCTGCTGGAGGAAAATCTGAGGCCAGGTCTGTATCAAGGGACTGATTGCCTTTTGGAGGAGGAGAGAAATGAAGTTGGCACAGGATTCTATGAAGCCCAGGCTCGAACTTGGATCCTTCTGCCTCCACCTCCTAAATGCTGGGTTAGAGCCTGTATAGGCTAGCAGATTTGGCTCTGTTCTGTGTTGTCACAGGATGACCTGGAATTGTGTAGCCTAGCTGACCTTGAACTTGATGATATACCTTAACCTCTCAGTGCTGGGATTAAAGGACTTCACCACCCCTGCCTGGCTAAAACAGCTTTCTAGGTGAATTCTATAGATGACAATCTCTTGTCACAGTGTTGAATATGCCTGGCTGGGACAGTCTGGCCATGACTCTGCCCTAATCTTATGTCTCAGCCTCTCCAGCTCTGGGATTACAGGTATGGGTCAGTTGTCATACCCATCTTAGACATCCTCTTGGGGATCTGGACTGGATACTTCATTGTGTCTGGTTGTCCTTTGAATGTTTGGGGTTTTTTTTTTTTTTTCTTTGGAGTTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCATGAATGTTTGTTTTTGAGGGTGTCTTAACTATGTAGACAGAGCTGTTATCATAGTCGCAGTGATGCCCCTGCCTCCGCCTTTCTGGAGTGCTGGGATGAAAGACCTGTTCCACAATTATGCAGGGGGAGGGCTTTTGGTTTTGTTGGGGGTTAGGGGACAGGGTTTCACTATACTTTATACTTGGTTAGCGTGGCATTTGCTTTGTAGACCAGGGTAGCTTTGAACTTGTGATTCTCCTGCTTGGACCTTCTGAGTGCTGGGACTACAGGCGTGTATTACCTACACATGGTCTATGATGTGCTGGGGGTGGAGTGTATGCTAGGCAAGCACTTTATCAACTATGTCTCCAGCATGTCCTTTTTGAAATGGGAGTCAGAATGGGGCACTCCCAGTCTTGCCCCGGCCTCCAGAGTGATGGGTGTTAACAGCCCTGCAACTTCTGTCTTCCGTTTGCCTTTTACCAGGGCCTAAGTAGATAAGAGATTGGATTTCAGCTTACTTAATGGAGTTTCTACCTTCAGCCCTGTCTTTCCATGCTTCAGTGTCTGTCCCCACGGTTGAAATGTTTGGTTGCTGTCAGATGTAGGCATTCAGGGGGTAAAGGAACCGGCCCAGCCTTTGGGGACCTTGGCCGGGCTACTGAGTTTATCCATCTCTGAGGTCTCTGTAATTGGGTAGGGATATTATAATGTCCCAAAGCCCACATCCATGTGCTCCAGGATGGGGTTCTATGGAAGCACCTGCTGTCTTTTTTCCACAG
Seq C2 exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAACCCACCTGGGTTCCCTTCAGCGCTACTGTGTCCTCGGAGGAGAAACTGGCTTTCTCTCTTCGTCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001434:ENSRNOT00000001952:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.0=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAAGACGCCCTGGTG
R:
CCTCCATCAGACGAAGAGAGA
Band lengths:
222-1726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]