GgaINT0029608 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:1641353-1641655:+
Coord C1 exon
chr10:1641353-1641471
Coord A exon
chr10:1641472-1641551
Coord C2 exon
chr10:1641552-1641655
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAACACATCTTTCCATTTAGGAG
3' ss Score
8.22
Exon sequences
Seq C1 exon
ATGACACCAGACTCCTTGATCTACAAAACAAGTTTATTCTATAAACCTACTCCTGTTGGCAACATGGTCATTGTAAGGACCAGCCCAGCTGTAGTTCCTATTGAGTGTCACTATCCCAG
Seq A exon
GTGAGCACATAGAACTGTTCCTCTGCATGTATGGACTTACAGTGATGGTTGGGTGTTTGTTAACACATCTTTCCATTTAG
Seq C2 exon
GAGGAGCAATGTGAGCAGCAATGCTGTCCGACCTACGTGGGTTCCCTTCCACTCCACGCTGTCAATGGAAGAGAAGCTGGTGTTCTCCCTGCGCCTCATGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721:ENSGALT00000002639:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.0=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTACTCCTGTTGGCAAC
R:
AGGGAGAACACCAGCTTCTCT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]