HsaINT0188693 @ hg19
Intron Retention
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 (sperm receptor) [Source:HGNC Symbol;Acc:13189]
Coordinates
chr7:76058832-76062347:+
Coord C1 exon
chr7:76058832-76058950
Coord A exon
chr7:76058951-76062243
Coord C2 exon
chr7:76062244-76062347
Length
3293 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
AGCTGCTGTTCTTCTCTCAGGCA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTAACTGACGATGCCCTGGTGTACAGCACCTTCCTGCTCCATGACCCCCGCCCCGTGGGAAACCTGTCCATCGTGAGGACTAACCGCGCAGAGATTCCCATCGAGTGCCGCTACCCCAG
Seq A exon
GTCGGTGTGGGACTGACTCATGGCCCCTGGTGCAAAAGCCCCTTGGGTGTGGCTGCAGGCAAGTGGGCTGGCTATGGGCTACAGCTTGCAGCATGGCTATTAGAACTACCTACCGAAGCATTTGCAGCTGTGGTTACTGTACTGCGTGGGATTGTGGGGCCTGCTGAGTCTAGTTCGAGCCCCAGAAGAGTATCAGGAGCCCAACTGCAGCTTAGCGGAAGCTTCAGAGCTGCTCAGCCCTGGTGGTGGTACTATGCCAGCCTCGGCCCTTAGGGTTCAGAAATGGCCTTCCAATAGTGCTAGGCTGGGGCCAGGTGCAGTGGCTCATCCTGTAATCCTAGCACTTTGGGAGGCTGACAGGTGGATCGCTTGAGGTCAAGGAGTTCAAGACCAGTCTGGCCTACATGGTGAAACCCCATCTCTACTAAAAACACAGAAATTAGCCGGGTGTCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGCTGCAGTGAGCCGAGATTGCACTGCTGTACTCCATTCTGGGCAACAAAGCGATACTCCATCGCAAAAAATAATAATAAAATAGTGCTAGGCTGCGTTCTAGAATCTGACCTGGGCGGTGGTGGCCTACTCTTCTGTGGTCCTCAAGCCCCTGGCATCAAGCACGTGCCTGTGAACTCAGGCCCTGAAGTGGGAGGAGAAACTATGGCTCCCAAGGACAACACTGGGTCCTGTGCTGGCCTCAGCATGGGGTGCAGGGGACTTTGTCCCTGCCCTTGAACCAGTCTGGGAGTGGGTATAAGATGATGCGGCCAGGTATGGTGGCTCACGCCTGTAATACCAGCCCTTTGGGAGGCCAAGGTGGGCAGCTCACGAGGTAAGGAGTTCAGGACCAGCCTGGCCAACATGGTGAAACCCATCTCTACTAAAAACACAAAAAAATTAGCCGAGTGTGGTAGCGCGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCATTTGAACCCAGGATGCAGAGGTTGCAGTGAGCTGAGATGGCACCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAGAAAATGCTAGTGTGAAGTGGGTAGGGAGCTGATACCAGTCAGGACATCATGAGGGATGAGCCATGCCCCTGGGAGGGGTCATGGTAGGGGTTATCCTAGAACAGGATCCTGGAGTGGGGGACCTTGAGGCTGAGATGGCCTGGGCAGAGCCATGTGGCCACACACCCAACGGGAGGGTAGTGTGCCCTTAGTAGGTGACATGCAGCCTGGGGGCTGGAGCCCAGGGACTGGGGTAATGAGGGAGCCAGACAGATGGGCTCACCAGCCTCACCACAGGTGCCCCTCCTGGAATGGGTGAGGACTGAATCTCCACCCAGGGTCACCTGGTGGCTGGTGCTGAAGACAAATGGGAACTAGTGAGAACCAGCTGGGAGGCTGGAAAACTGGGATTCAATGAGGCCTGACCCATGGTTGCAGGGACCGTAGAGGCTGACTCGCAGGAGCTAAGAGCAGTTGGAGGAGCTTGGTGCCTATGTGGGTAGGGGAGATGGAGGAGGATAGAGGAGTCAAGGGCAGGCTGCCCAGTCGGCATGAGGGACTGAAGCTGTCCTGTGACCGTGGAAGTCTGACTTCAGTCTCTGGGCCTGACCCCTGAGGATGGTGGCTCACCTGGTCCATTGGCTGTAGGTAGTATTAGAGAGGCTGGTTGTAGGCTGGGATGCTTTAACCTGGCTCCAGATACCTGAGTCTGGTTATCAATAGATGCATCCATCACTTGGAGTAGCTTCTTCCAGCAGATCCTATGGGGTTAGCAGGGTAGGTATCTGCAGATACCCAGACCTGCTTCCATGGACTTCCCAGTCACTGGTGTGGGTCCAGGCTCTCGGTAGCATCTCAAGACCTAAGGGCCTGTCTTTGATCTCTAAAGGATGGCCTTGGCTGGGCATGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATGGAGACCATCCTGGCTAACGTGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCCTAGTGGCGGGTGCCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGTGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGTACTCCAGCCTGGGAGACAAAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAGATGGCCTTAGCTGATTCCCCTCTCAAGCATCCTGTGGAGTACTGTGCAGGGCCTGCTATCAGACCCCAAACCTGAACCTCTAGGGCTAAAGTATGTGTGGTGGCTTTTGGTTTTTTGTTTAAAAAAAAAAAGTCTTACTCTGCCGCCCAGGCTGGAGTGCAGTGGGGTGCCATCATAGTTCACTGCAGCCTTGACCTCCTGGGCTCAAGCAATCCTCCCATCTCAGCCTCCTGAGTAGCTGGTATGTACTACTATGCCCAGCTATCTTTTCTTTTCTTTTCTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAAACTCCACCTCCGAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTAAAGGCGCCCGCCACCATGCCCGGATAATTTTATTTTTAGTGGAGATGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCTCAAACTGCTGGGATTATAGGCTTGAGCCACCGTGCCTGGCCTCTTTTCTTTTTTATAGAGATAGAGTCTTGCTATGTTGTCCAGGCTGCTCTCAAACTCCTAGCCTCAGGCAATCCTCCAGTCTCCACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACTCAGGTCCAGGGCTCAAGAGGGAGCAGATCTCAGTCTAGAAACCAAACTCCTAGGTTCAGCTGTATCTGTCTTCAGCGGCCCAGATAGCATCATAGCATCAGTTAGGATGGCTAGGCCACTCACAGGTGCAGAAGTTCAGGAGGGTGCAGGGGCAGCCTCAGGCTCAAGGTGTCTGTTCAGCCATCTCGCACCAGCTACCTGGCTGGGCCATAGCTGAGGACCCTGTAGTGGGGTAGCAGTGAGATACTCCCCATCAGTGGGGGCCCAGGTGGGTGTGACCTGAGGCAGGTGTGCACAGCTGCTGTTCTTCTCTCAG
Seq C2 exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-ZP3:NM_001110354:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(15.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)