BtaINT0166317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014834 | ZP3
Description
Bos taurus zona pellucida glycoprotein 3 (sperm receptor) (ZP3), mRNA. [Source:RefSeq mRNA;Acc:NM_173974]
Coordinates
chr25:34967028-34967378:+
Coord C1 exon
chr25:34967028-34967119
Coord A exon
chr25:34967120-34967250
Coord C2 exon
chr25:34967251-34967378
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTCCTGTATTTCACTCTCAGGTG
3' ss Score
9.79
Exon sequences
Seq C1 exon
ATATATATCACCTGCCACCTGAAGGTCACTCCGGTTGACCGAGTCCCGGACCAACTAAACAAAGCCTGTTCCTTCAGCAAGTCCTCCAACAG
Seq A exon
GTAAGGAGAGCAGACTAGGGTGGAAAACCAGCCATCCTTGCTCATGCTGATTTTTCCCCAATGTGCCCACTATTAGCAAACTGCTTCCTGCAGGCTGCAAAGCTGTCTAACTTCCTGTATTTCACTCTCAG
Seq C2 exon
GTGGTCCCCGGTTGAAGGCCCCACTGACATCTGTCGATGCTGTAGCAAGGGGCGCTGTGGCATTTCAGGCCGTTCCATGAGGCTGTCCCACCGGGAGGGCAGGCCTGTTCCCCGAAGTCGCAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014834:ENSBTAT00000019756:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(9.7=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACCTGCCACCTGAAGG
R:
CTGCGACTTCGGGGAACAG
Band lengths:
211-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]