GgaINT0029612 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:1642324-1642646:+
Coord C1 exon
chr10:1642324-1642415
Coord A exon
chr10:1642416-1642500
Coord C2 exon
chr10:1642501-1642646
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CGTGGGTGTTCCTCTTTCAGCTG
3' ss Score
10.68
Exon sequences
Seq C1 exon
ATCTACATCACGTGTCACCTGAAGGTCTCCCCAGCAGACCAGGCTCCCAATCCATTGAACAAAGCCTGTTCCTTCAACAAAGCCAGCAGCCT
Seq A exon
GTGAGTAGCTGAAGGACACGTTGGATGGGGACAGCTAGAAGGAGAGGGCTCACAAGTGATTCCTTCGTGGGTGTTCCTCTTTCAG
Seq C2 exon
CTGGGCTCCTGTGGAGGGTACTGGAGATATCTGCAGCTGCTGTGAGACGGGTAACTGTCAATTATATGGAGGATACTCCCGGAGATCGAACCCTCTGTCCAGATGGTCAGGGAGACGCTTGAAGAGGGACACCTCTTCCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721:ENSGALT00000002639:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(9.6=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGCTCCCAATCCATTG
R:
GTCTCCCTGACCATCTGGACA
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]