RnoINT0169358 @ rn6
Intron Retention
Gene
ENSRNOG00000001434 | Zp3
Description
zona pellucida glycoprotein 3 [Source:RGD Symbol;Acc:620606]
Coordinates
chr12:23736149-23736505:-
Coord C1 exon
chr12:23736414-23736505
Coord A exon
chr12:23736286-23736413
Coord C2 exon
chr12:23736149-23736285
Length
128 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTTTTGTCTTGTTACTCAGTTG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GTTTACATCACCTGCCATCTCAAAGTCGCTCCAGCTAACCAGATCCCCGATAAGCTCAACAAAGCCTGTTCCTTCAACAAGACTTCCCAGAG
Seq A exon
GTGAGGAGACCAGGCTCTCAGTGTGTGTAGGCACCCAGAAGGCTATTCACATCGACCTCTCTTCAATAACACAATGGCAAACATTGCCCCTATCTGAGCTTAATTAAGCCTTTTGTCTTGTTACTCAG
Seq C2 exon
TTGGTCACCAGTAGAGGGCGATGCTGACATCTGTGATTGCTGCAGCAATGGCAACTGTAGTAATTCAAGCTCTTCAGAGTTCGAGACCCATGAACCAGCCCAGTGGTCCACGCTAGTTTCTCGAAACCGCAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001434:ENSRNOT00000001952:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(9.6=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACATCACCTGCCATCTCA
R:
GTGCCTGCGGTTTCGAGAAA
Band lengths:
228-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]