GgaINT0029612 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUH5]
Coordinates
chr10:1763868-1764185:+
Coord C1 exon
chr10:1763868-1763959
Coord A exon
chr10:1763960-1764044
Coord C2 exon
chr10:1764045-1764185
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CGTGGGTGTTCCTCTTTCAGCTG
3' ss Score
10.68
Exon sequences
Seq C1 exon
ATCTACATCACGTGTCACCTGAAGGTCTCCCCAGCAGACCAGGCTCCCAATCCATTGAACAAAGCCTGTTCCTTCAACAAAGCCAGCAGCCT
Seq A exon
GTGAGTAGCTGAAGGACACGTTGGATGGGGACAGCTAGAAGGAGAGGGCTCACAAGTGATTCCTTCGTGGGTGTTCCTCTTTCAG
Seq C2 exon
CTGGGCTCCTGTGGAGGGTACTGGAGATATCTGCAGCTGCTGTGAGACGGGTAACTGTCAATTATATGGAGGATACTCCCGGAGATCGAACCCTCTGTCCAGATGGTCAGGGAGACGCTTGAAGAGGGACACCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721:ENSGALT00000002639:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(9.6=80.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGCTCCCAATCCATTG
R:
GTCTCCCTGACCATCTGGACA
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]