HsaINT0188697 @ hg19
Intron Retention
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 (sperm receptor) [Source:HGNC Symbol;Acc:13189]
Coordinates
chr7:76069567-76069928:+
Coord C1 exon
chr7:76069567-76069658
Coord A exon
chr7:76069659-76069791
Coord C2 exon
chr7:76069792-76069928
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGCTTCTCTTTCATCTCAGCTG
3' ss Score
8.3
Exon sequences
Seq C1 exon
ATATACATCACCTGCCACCTGAAGGTCACCCTAGCTGAGCAGGACCCAGATGAACTCAACAAGGCCTGTTCCTTCAGCAAGCCTTCCAACAG
Seq A exon
GTGAGGAGGACAGGTGCTCCGTGACTGGAGTAGAAACTGAATCGGCGACCCCTTGTCTATTTCCCCCAATATATTATCAGCAAACTGCTTCCTGCAGGCAACAAAAATCTAAGCTGCTTCTCTTTCATCTCAG
Seq C2 exon
CTGGTTCCCAGTGGAAGGCTCGGCTGACATCTGTCAATGCTGTAACAAAGGTGACTGTGGCACTCCAAGCCATTCCAGGAGGCAGCCTCATGTCATGAGCCAGTGGTCCAGGTCTGCTTCCCGTAACCGCAGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-ZP3:NM_001110354:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(20.8=81.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCACCTGCCACCTGAAG
R:
CATGCCTGCGGTTACGGG
Band lengths:
226-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)