BtaINT0166397 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112939623-112942579:-
Coord C1 exon
chr3:112942166-112942579
Coord A exon
chr3:112939810-112942165
Coord C2 exon
chr3:112939623-112939809
Length
2356 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TTTTGGCCATCTGTGTGTAGGAA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GAGAAAATGGCCGTAGCCCTAGAAGCCCGGGCCTCCCCGCAACAAGAGCCTGAAGAACTTGTGATTGTGAAGCTGGAAGAGGACTCCTGGACCCCAGTCTCCCAGCCCAAGAAGGACCGTGATCACGTCCCTGGCCCCGAGGCTTCCCGCCAGCGCTTCAGGCAGTTCCAGTACAGGGAGGCAGCAGGGCCCCACGAGGCCTTCAGCCAGCTCTGGGCACTCTGCTGTCACTGGCTGAGGCCGGAGATCCGCCTCAAAGAGCAGATCCTGGAGCTTCTGGTGCTGGAGCAGTTCTTGACCATCTTGCCCCAGGAGGCCCAGGCCTGGGTCCAGGCCCGCCACCCTGAGAGCGGTGAGGAGGCGGTGGCCCTCGTGGAGGATTGGCACCGAGAGGCGCGGGCCGCGGGGCAGCGG
Seq A exon
GTAAGGCAAAGAGCCTGCTCTCCAAGGGGCAGGCCGGGAGGCAGTGGGGCTGCTACCAGGGGGATGATGGCCAAAACCACAGTAGTGATGTCATCAGTCATCCGATGTGTGCTGAACACTGCAATACCCTGGGCACTGTTCTAAGTGCTTTCCATGTATCCACTCATTTCGTCCATCAGCAGTTAAATGATGCCAGTACTGTTTATCCTAGTTTTACCCATGAGGAAAATGAAGAAAGGTCATTGGATCAAGGTCACTGGCCTCTAGAGAGGCAGGATTTGAATTCAGGCAGTCTGCGTCTATGCTCAGCATCTGTAACCATTGCTCTAAGCTGCCTCCCAGTAGATAGTCACAGTACATTAATTTGTATTGTGTTTTATACTTAGAATCTTTTTTAAGTATGTGATCTCTTTAGTTTACAGCAGGAATGTAGGTTGACAGAAATAGCATCATTGTCCTCATCTTACGGATTAAACCAAGGCCCCCGAAGATAGGTGGCTCACGAGGCTCAGTCAGTATGAACCAGAGCCTGAACCCAGATCCTGGGTTCCAAGTTCATTGTTCTTTCTACTATATGGCATATGCTGTACCTGCAAACCACGGGAATTGAAATACCTCTGAGTCATGAGGCTCAAATGATATTAACTGACATTTATTGAGCACTCACTGTGCCTCAGACACTGTTCTAAGCTTTCTGTGCGTATTCCTTATCTAATCAACCCAGCTGCCCAGTAAGGTACCCCGTAAGGTAGGTACTGCTGACATGGCCATTTTCAGATAGTTCAACAGACTCAGGTAAGTAACCTGTCCAGATTCATAGAAAGGGTAGAGCTGAGATAAGGGTCGTGAAAGTATTGTGGATTTAACATTCACAGTTTCAATAATTTTCAAGAGACCCTGAAAGCCCATGAAAATAATTTATAATTTTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGGTTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTTATGACAACAAATTTTGAATCCCGCTTTGAAGCTGGTACTTGTAGAACAGGTCCTTCAGGCCACTATGGCCTGAGCCAGCCAACCAAAACCTTCATCTCAATGTAACCTTGCTGCTTCAATTTTGTTTCTGTGAATCTTTCTGTTTTACAGATAGGTTCATTTGTGTCATATTTTGGATTCCACATATAAGTGATATTGTGCAGTATATGTTTTTCCCTTTCTGACTTAACTTCACTTAGTGTGATAATACTTAGATGCATCCATGTTGCTGCAGATGGCATTATTTTGTTCTTTTTTTTATGACCGAGTAGTATTCCATTGCATCTATGAACCATATTTGATGAATTCTTAATTCACCCTTGCCCCAGTCAATATCCTCCTGATTTTTTGCCTCCTCATAGGCACTTGAATCTGCTTCTTTCTAAAATTATTGTTGGGTCTAGATCCCTGCAGTCTATGGGGTCGCAAAGAGTCGAACAGGACTAAGCGACTTCACACTTTTCACTTTCTAGTCCCTAGCACTTCTGTGGATTATAAGATTGTAACTATAACAAAGTTATTTTTATCTTGAACACAAAGTTACTGTTTTCTTAAAACATTGACAAGCAGGTGTTTTCTCTCTATGAATGTCACAGAACATTGGTGGGTCTCCTCCTTGGGAATAGCTTTTGATGATCACAACCCATCCTAATATATTTTCTCAGAGATAAAATTCCTCTCTGTGAGAGTGGATTTGAGTTTTCAGATTGGCCAAAAGGTTTTTGGAGTGAGTTTTTGGCAAACTCATTAATAAAGTTTGATAAAGGTGAATATTATCTTGGATAAAAAAATAAGGTTCAAGGCATTGTATAATAGTTGCTACCTTTTATGTCAAAATGGGGAAAAATAATATATATTTATATGGTTGCTTGTATATAAAGAAACTCTGAAAGGCTGCAGAAGAACAGTGGTTACGTATGGTGAGGAGTTGGGGAAGATACTGGACAGATGGCATGGAGACAGGTGGAGTTTGGGGTATTTTCACTAATTACATCTCTGTATGTTTTCTGTTTTTGAACCATGCGAGTGTTGAAAGTACCTATGGAAAAAGTTGAGCAGACAGTCCCGCTTTGGTGGTATAAATGCTGGATTGTTACTGAAGTCAGTCTGATGACTTTGTCATACTTTAAGCCATCTTTGGTTTGTTTTTTTTGTTTTTTAAGAGCCTGTTAACATCTGAACCACAGTTGTAACTGTAAAGAACATGCCCTACCCTACCAGTTATTGAACTTATGCTTGGGAATTTTGGCCATCTGTGTGTAG
Seq C2 exon
GAACTGGAACTGTGTGCAGAGGATACGAGGTCCTTAAAGACAACGAAGGAATCTCAGGGCTGCCAGCTGCAGCCAGCAGATCACTGGCCTGAGGAACAGTCCCAGAAGCAGTGGGTGAAGAACTCGTGTCCTGACCTTCCCAAGAATCTAGACACCAAGATGGTGCCACAGCCCTTGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555:ENSBTAT00000026057:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=NA C2=0.841
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=68.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]