RnoINT0169472 @ rn6
Intron Retention
Gene
ENSRNOG00000005886 | Zscan20
Description
zinc finger and SCAN domain containing 20 [Source:RGD Symbol;Acc:1562996]
Coordinates
chr5:146769291-146781752:-
Coord C1 exon
chr5:146781260-146781752
Coord A exon
chr5:146769463-146781259
Coord C2 exon
chr5:146769291-146769462
Length
11797 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGTCTTAACTTTGTGTGTAGGGT
3' ss Score
5.5
Exon sequences
Seq C1 exon
TCTTGGGGAGCAGTCCCTCCCAAGAAGTACACATCGTCAATGCAGGAAGCCACCGGATGAGGACGACCCTGCTAAAGTGGAGCATCCAGGCCAGATGATGGCTGTGGCCTCGCCCCCGCCCGAGCCGGAAGACCTCCTTATCGTGAAGCTGGAGGAGGACTCGTGGGGATCACGCTCCAGGCCTGAGGAGAGCAGCCATAGCTCTGTCCCTGGCCCCGAAGTTTCCCGCCTGTGTTTCAGGCAGTTCCAGTACCAGGATGCGGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGACCTGAGCTTCGCCTGAAAGAACAGATTCTGGAGCTGTTGGTGCTGGAGCAGTTCCTATCTATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCTGGACAGCAG
Seq A exon
GTGAGGCTAACAGTCTGTTCTCTGAGAAGCTGATTAGGCAAGGTAGCGAGTCTGGGATTGGGTTAATAATCTCCCCCAAATTGGAATAATAGTGATCATTGAGTAATTACCATTTACTGAGCCCTGCTGCGTAGCAGGTAGTATTCTGACTGCTTGACTTGTATTAGCATTTATTCTGCCACAGATTAATAAGGTGGGCCGGTACTGTTAGCCTAGTTTTTCTAGTGAGGAAATGGAGGCAAAGAAAAGAGAGATAATTTGTTCAAAATCACCAGCTACTGGGTTGTAGAGCCAAGATTTGCACTCGGAAAAGTCTGACTAGAGGGTGTGTGCCTAACCAGTACCATTCAGTGTGCCCGACCTGTATTATGCTGTGTGTTCAACAGTCATTATACGTACTCGGATCTCTTCTGATGCGTGTAGCAGCACAGAGGCAGAAAGAGTTTTACTGTGTTCATTTGGTAGATTAGGGTTCCAAGAATCGGATGTCTCATGGAGGTCGCTTGGAGAGCGAACCAGAGCCCAACCCTCCCACTCAGCCCCTCCATCCTTGGGGTTCAAGGTCATGCATGCTCTTTCCACTGCGAAACTGATGCTTCATCTGCAAAAGTGCAGTTTAAAATGCCCCCGAGGGTAAGGCTCAGGGGAGCATTCACTGATGTCCCTGCACACCCACTGTGTGTCAGGCCCTGTTCTGAGCCTTTTATGTGTGTAGGTCATCCTGTCAGGATACTGTTTTTCAAATGAGCCAGCAGCAAGGTAAGTAACTTGTCCGAATCTGAGTGGTAGAGACGAAAAGGGGAGGGGCATTGTGGATCCCACATCCGCAGTCTCAACAACTCACAAGCAACTCTGAGAACCTAGCATGTAATATGTCATTTTCCCATGGCACAGAATTTGGATCCTGCTTGCAGCTGCCCCTGTGGCTGGCTTCAGGCTGATGCAGCCTTTTGGACGGAAACTTCACCTCACACCCTTGCGGCTCTCCACTTGCTACAGTCAGGAATCCCCATGGCCTCGTACCTGACCACGTTTGGTTGTGAGGACTCTGTGTTAGAGAATACATATGCTGTAAATGACAAGGTTTTCTATCCATTTAAACCGTAAAGCTCCGTATAGATGAGAGAGTAGGGGAGGGAGGGCCGAGGTCCGTGGCTCTGCTCCTGGACTCCTTTATAGACTGGCAGAAAGCTACCATTTCACATCCAAACACAGAGCTTGAGCACAGGGAAGAAACAGTGGAATCCCTCGGACTCCGGAGCTGGAGGATGAAGAATGTGAGACCCTGAGATGAGGATTGAACTCAGAGCGTTTTCGATACTCGACTGTGAAGTGAGAAGCCAGATTAGGCTAGTTTTTCAAGCGACACCCCTGTGAAGTGGCCAAAGGTTGAACCTTCTAAAATAGAAAAAGGAGATAAAGCAATGGCGTCCTCTCTGCTCCCCCTTTTCCATGACCTACCTCCATGTTTGTTCTCCAGCTTCTCTGCCTGCTCCTGGGTCCTCACAGTAGTAGGTGCACAGGGGGAAGCCTTCTACAGTGCATGCGCCACAGCTTGTGGCCTAGAGTTACAAGATCTCTGAGTTGTCTCCCTTTCTGGAGGCAAATCTAATTCTTCATTAGAGGGTGAACTTTTTAACTCCTCAGGGTGAACCTCACCCTGTTGTCGGTGCCTTCACTCAGGACCAAGTGGCCCTAAGATGTTTCCCTAAAAGGGGTCTTCGAGTACCGCTGTCTTACAGTCTTTAGCTTATTTCCTCTGGAACCCCACCCTTCATCAGGTATTCTGACGGAGTATTCGTTATTTTGAAAAGTTTTTTGGTTTAGAACTGAGTGGCGAGTACGGCGTTCTCAGATGTGGTCTCCATCACTGTCCTCATCCCCTGTCAGAGTGGAACGTTTATGACCCCAGTGAGCCTGCACTGACATCATCATCCCCCCACGCCCCAGAGTGTGCATGTCACGCCAAGGCTCACTGCCGGTGCTATGCATTGTACGGATTTTGGCAGGCACATGATGACACGTGTCCACAGTTATGGTATTGCTCATAGTAGGCTCACTGCCTCAACAGTCCTATGTTCCGCTTACTGGATTCCTTCTCCTCCCAACCCCTGGCAACTACTCATGTTTCTGCCATCACCTAGAGTAGCCTTTCTTTGAATGCCACAGAGGCGGAGTGCCACAGTCTGTGACCTTTATGCCTTGGCCTCTTTTACTAAGTAACGCATACTTAGTGTTCTTCCATGCATGGCTCGATAATTGCTTTTCTTTCCAGCACTGAATTCTGTTCTGTTGTCTGGATGCACCAGTTCCTCCAGTCAAGGCAGAAGGATGTCTTGGTTGTGTCTATGTTTCGTCAGATAGGACTGAAAGCACCGTAAGTGTCATGTGTACATTTTCGTGGGCACATGAGATCTCAGGCCATTTGGGTGAAAATAAAGGACTGCATTGTTGGTTTTTATTGCCGAGGGGTGTTTATAGTCTTACAAGACATTGTTGAACTGTTCTGGAACGTGGCCCTGCTGTTCTACGTCTTTTGCTGGCAGTGAGCGTGGGTTTCTGTGGTTGCTCATCCTTAGTAGTCTTTGGTTTTATGTTGGGATGCCAGGCATTCTGATAATTGCAACGGGGTCCCACATTTTAATTTGTCATTTCTTATATGTGTGGTTGGGTGCACATATGGGTGAGTTTGTATGCACATGTTAGAGGCCACGGGTTGATGTCAGGAGTCTTCCTCAATAGTTTCTCTAAATTAGTTTGAGATGTGGTCCCTTACTGAGCCTGTAGTTTACTGACTGGCTAGAGATACTGTACAGTGAGCTCCCGGGAGCCTCCTGCATCCTCCTCCCTCAGGCTGGGATGACAGGTGCATGCATCCTCCTCCTTCGGGCTGGGATGACAGGTGCATGCATCCTCCTCCCTCGGGCTGGGATGACAGGTGCATGCATCCTCCTCCCTCGGGCTGGGATGACAGGTGCATGCATCCTCCTCCCTTGGGCTGGGATGACAGGTGCACACTGTTTTTGCCCTGGGTGCCGGGTCCTAACCTTGCTGTGCAAGCACTTCACTGACCGAGCCTTCTTCCTACTACCCAATTTGTGTTTCTTAATGATTATAAACACCTTTTCACATGCTTGGTTGGCATCCGTAAGTCTGTGGTGAGGAGTCTGGGTTATTCTGGTTCTTTTGCCTCTCCATATAAACTTAGAATCGATGGTAAGCCAAGATTCAACAAAAATTCTCAATAAAATACAAGCCAAATTCAAGAACACATCAAAAATACCATCTACCACAGTCAAGTCAGCTCCATCCCAGAGACACATGGTTGGTTCAACAGTAAATAAATATAGTCTTCCACGTCAGTTGATCTAAAGTGCAGGAACCACACGATCATCTCGTAAGCAGAAGAGCCTTTGACAAACGCCAGCATCCCTTCATAATAAGAGTTCTAGAGGGGTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGCAACCACAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAGAAAAAGAAAAAAAAAGAGTTCTAGAGAATGGGACAGGGGACATACCTCTACATAATAAAGGATATGACACAAGCCCACAGTCAACATCAAACTAAATGGAATATTTCCACTGAAATCAGGAATAAGACAAGACAAGAGTATCCCCTCTCTCCTCTCCTGTTCAATATAGTGCTTATTTTCTTAGCTAGAGCAGTAAGACAGGAGAGAGATAAAAGAAGCAACCGAAAAGGAAAGGAAAATGTCAAAATACCCAATTCATAGCTGGTAAACACATTCAAAAAGCCTATTAGGATACAAAATTACCACACGAAAAACCATCTTCCTATATGCAAACAGAAAATACTAGAAAGAAATCAAGAAATCATTATTCACAATTACTTCACCCCTCCCTCAAAAAAAAAAAAACCAACACCCCAACATTGGAATAAATCTAATCAAGAAACTGAAAGCTTGTACAATGAGAACTTGAAGACACTGAAAAAACTGAAGAGAGCACCAGAAGATGGAAAGACATTCCATGCTCATGGATGGTAGGGTTAATATTGTGAAAATGGTCATTATACTGAAAACAGTCTGCAGATTTAATGCAGTCTTCTCCATCAAAAGCCCAACACAGTTCTTCACAGAAATTGGGGGAAAAAATTAAATTTATATGGAAACACGAAAGACCCAGGATAGCCAAAACCATCCTGAATAATAAAAAGCACTGCTGGAGACACCAGCATCTCTGATTTCAAGCCATACTACAGAGATAGAGTAATAAAGCCAGCAAGATTCTGGCATCAGAACAAACACATTTGATACATGGGATGGAAACGAGGACTGAGATAAAAAGCTCACACTTTTACAGCCACCTGATTTTGACAAAAAATACACACTGGGGAAAACACAGCTTTCTCGGTCACTGTTGTATTGCTGTGAAAAGACACCAGGACCAAGGCAGTTTGTAAAAGGAAGCTACAGTTTCAGAGGGCTAGTCCATGGCCATCATGGAGAAGCAAGGTGGTATGTAGGCATGGTGCTGGAGCAGCAGCTAAGAGCTTTCATCCTCATCAGCAAGACGGAGGCAGAGAGAGAATGAAACTGTGATACAGGATATTTGATCACAGTGTGAACCCCAAGATTGTGGACTGGAAAAACCTGTTTCTAATTACGGTACAGCTCAGCCTTTGATCCTAGAGCTTTCTGTTTACCATAGACAAGTGCTTGTGGTGTGGCTTAGCCCTAGCACGCACTTTTAATCCAAGAGCTACACAAAGTTGACCCTAGGTCAAGAGGCAGAGCAAGTAACCAGCCAATAGGGAGTGAACATAAATGAACAGAAAGGAGGGTCTTTTGAATCAAAGGGCATTTAAAACAGCGTGGAGAAGGAGAAAGAGCTTTTTCCTTCTGGAGGGGAAGTGGAGTAGGAAGGTCAGCTAGGTGCTTTCTCTGCCTCTCTGAGCTAGTGAGCATTTACCACAGTATCTGGCTCCCAAGGCTTCATTTGGCAAAATCGAACAGCTGGGATTTTTGTTTTAGAAACAAGACTGGACCTGCTGTGGGCTTTCCTTCTCCAACGAGGCTACACCTCCTCCTCCTTCCTGAAGTCTACCAGCTGTGAACCAGACATGAAAATACACGAGCCTAAGGGGCTATTCTCATTTGAAACACCACAACAGCATCAAATGTCAGCACATGGCGCCGGTCAAACTGGAGAGTTTGCATGTAGAATGAGCTAGATCCCTGTCTTTCACTCTACACGAGACTCAAGTCCACATGACTCACGGACCTCAGTGTAAGACCTGATAACCTGAGTCTGATAGAGGAGAAGGTGGGTGGGTGGGTTAGGGATGTGCTTTAACCCATGGGCTCAGGAAAGGACGTTCCTAGCTAGACTGCTGCATCATAGGCATTAAGACTAACATTTGACAAGTGGGACCTCATTAAACTAAAAAGCTTCTGCACAGCAAAGGACATCATCATCTGAGTGAAGAAACAGCCCGTAGAATGGGGAAAAGGACTTGCCAGTTATACATCTGATAGAGGGTGAGTATCTAGAGTTGACAGCAAACAAAACAACCCCACACCCTAAACAACAAATATTCGAAACCCAAGTAACTTTTGGAACGTGGAACTATACAAAGAATTCTCAAGAGCAGAAATACAAATGACTGAGAAATCCATTTTTTAAAACTTTCAATATCCTTAGTGGTCAGATAAATGCTGCTGGGGCCAGCCCCAGCCGTTCTTCTTTCTTGAGACAACAGAGGGGAAAGAATGTCAGTGGGGGCAAGACTTGATCTTGGGAGATATTTAGGGTTGCCTTTTAATAATAAAAAATTTACTATCTTAAGTCTAAGTCACTGTCATTCTGTAGCTGACCTCTCTGTCGGATTTGCTCTGAGGCCAGAAGCTGCAGTCTTTGGCATTTAACACCTCATCCCCAAACAGCCGGATCCCCATAATGCCCTTACTTCCAATGCCCTTACTCCCAATGCTAAGCCTTCACTTCTAAGTTGTTTTTTATTCTTTAGTTCAGTTCTTTCTCCTCTGTTCTCAGCACTTACACATCTTTCAGATACAAAATCACATGGTAAAAAGTTCACAAGTCTACACATAAAATTTAAACCATAAATTGAATAAGAAGCTTACAACACAGTGCTTACATGCGTATCTGGCTAAACATTCACCGTCTCTCACTAGCTCATTAGGTTCATGGAGAGTTAAAAACCATAATTTCTGTGACTAAGGTATTAGTGAAGTTTTGTATAGATAAACCCAGTGAATATTTTATCTTCTGTCCTCGCACCTATAGTAAATCCTTAGTTCCCTTTTTATGTCCTTTGGTTAATTGCTTTACAACCTCGCAGAAAGTGCTCTGACTTGTAGATACCTGCTTACTATCTCAGAAGCAATTAACTCATGACACTTGAAGACTGGCAGAGTTCTCAATGCAGTTTTGACGTCAGAAAGGACTTAATAGCAGTTCTATTATAAAAGAGCTTGATAATTACTAATGTAATTTTAGGATGCCCCTCCCAACATCACCCCCACCCCCACCCCGGAGCTGAGGACCAAACCCAGGGCCTTGCACTTGCTAGGCAAGCGCTCTACCATTGAGCTAAATCCCCAACTCCAATTTTAGGAATTCTTATAGGATCATCATTAAGAGTTAAGAAGTCATCTATTTGTCTAGCGTCACTACAAGACAGTACATCTTCGTAGATCTGCAGAGATATGCTCAAAAGGATGGGCTAATACCTAGTGATGGTAATATATATTTAATACCAACAGGAAAAGCATATTAATAGCAGGAATCTTCCCTAAAATGAAATTCTTCTCAGCCTTGCCTAGAGAAGCGAGTCCATCATTAACTTTGATAGTCCATGAGGAACCATCTCAGGAAGATCACCTGCTAGTTGTTAGCTTCTTCTGATGGCTCCTGGCAAAATGCAAATTAGAACTGTTCTGAGACTTCATCTCACCCCAGTCAGGATAGTTGAGAATAAAACAACAGCAACAATAACAACAACAACAACATCAACGGCTGACAAGTTAGAGCGGTGTGGATATGGGGGAGGGGATATTTAATGCCTCTTAGTGGAAGTACAGGCTGGCACAGCCACTGAGGGGTCAGTGTGGAGGTTTGCCACAAAGCTAGCAATAGGTCTGTCGTGTGATCCAGCTATACCACTGCTCAGCACATTCCTGAGGGACTGTCTTCTGCCACAGAGGAACCTTCTCGTCCACCTTCACTCTGCTTTATACACAGTAACTGCACAATGGAAACAGCCCAGATGTCCTTCTGCAGACGATAATGGATAATGAAAATGTGTAGATATAGTGGAATGTTATTTAACTGATAGGAAAATGAATTACGGAATTCACAGATAATGGTTGGGGCTGTAATTAATCACTTTGGGTGATGTAACCCAGACCCAGAAAGACAAATGCTGCATGTTCCCTCTTATGTATAGATGTTAGCTTTGACAATTTAGATGCGTGTTCATTTCATTTTATTTGGGGAGCGGGTGGGGTCCGAGATGGTTTCTCTATGTAGTCCTAGCTGTCCTGGAACTTACTAAGTAGACCACACTGGCCTGGAACTCAGAAATCCAACTGCCTCTGCCTCCCAGATGCTGGGATTAAAGGTGTGTGCTACCATTGCCTGGCTTAGATGCATGTTTAAATTGGAGTGCCACAGAGCTCAGGAGAGTAGTAAGGGGTCATGGTGTGTTAGTTACTTTCTAGTATTGAGACAAAACACCATGACCAAAAGCAACTTGTGGAGGTTCAAGCTCACACAGTTCAGTTCATAATCAGGGGAATCAGGACAGGAACTCAAGCAGGAGCTGAAGCAAAAACCATGGAAGAATGCTCTTCCCTACTTGCTTTGCCCTCTCTGGCTTGCTCAGCAAGCTTTCTTATATAACCCAGGTCAACCTACCTAGGCACTGCCCAGAGTGGACGAGACCCTTCCACATCAATTGACATAGAGAAAGTGCCCTGCCCCAGTTGAAACTCCCTCAGATAGCTCTGGGATGTATCAAGTTGATAGGCGAAGATGACTAGGGGAAGGGGGAGGGAAAGAACAATGGAAAGAATGGGTTAAAGGGATGAGGGAGGCAAGGTAGTTTGGGAAGGGATAACTAACAAGACCTTTGAAAATGCCATGTGGAAAAGTGCCACTGAACAAGCTTCCTAAAATAGTCACATACATGCACATGCACATGCACACACACACATGAATGGAGTCACCCTACCTAAGAAACAATGCTTTCCTCAGGTCCCAGGCTATCAAATAAAAAGCCCAGTTCCAGATATGAGTTCCCTCTTTTCAAGTTGTTGGTCAGTGGGACCCCAAAGACCATCCCACCAGCACTACAGGCTACAGACCTTGCCCCTGGTCGCCTTTCAGAACTCAATCCTAAGAGCCTGTTACTGAAGACACCATGTATTTGAATTAAAGAGAAACCAAGCTGGTACCAACCTGGAAGCTTCATCCCCACTAGCTAGCTTTCCTAGAGGCAGAAAGTGTGACAAGGGGCCTGGTAAGATCTCTTGGCAGGTGCAATGTTGTCATGAATGTTATGGGGTAACAGATGGCATGATTGGATTTGAGGCCTGCTCCACAAGATGGGGCTCATGTTTGGTACTGCTCACTGGACTAAAAACTCACTGACAAGGTCACAGGCCTTAGCAGAGAACCAAATACGATTATTCTGCTAAACGGACATAGTATCAAGCTGCCCCCTAAATTCTTACCTTTATTTCCACGGATTACCACATCTTCTGTCATGAGAGAAACTACTTTTGCAGCAGGCGTGGATTAATTCAGAGACACACAGCCTGTTACCGTGCAGAGTAAGAGACTGGAGCGCTCAGCTCTCACTGGGATGTCTCTACCATACACCCTACCCCAAGGCTCGGGGAGCATCACAAAACAGGAGACAGAAAACTTGTAAGAGATACAGGGAGTAGCTGCCTGCACTGAAAGATTCTTTGCTGGACTTGACAAGGCTGCTACACGCATGAACTCTGTGTGGGGAGCTGACCCTGGTCTTCTGGAAGAGCAGCCATGCTCTCGGCTGCCCAGATATCTTCAGCCCTGGGTTCTTCTGGTTGCAGTGCTGGTAACTCAACTCCAAGCTGTACAACTCTCACTGCATCCCGAGGCCTTCTTGTTTTAAGTTGTATTTACGTGTGACTCAAAGTTCTTATAGACTTCTCTTGAAATTCCTTCCTTGACTCAAATATTTACTTGTGTATTGTTTGGGGCCCAAGTTTACTGGGACTTTTTCCAGTTACCTTTCTGTTTCTGGGTCACCTCCATGTGGTCTGATAGCACAGGTGTCATGATCCTGTCCTTTCAGGTGTGTTTTGTGGCCTGGCATGCGGTTGCCCTGGCAGTGAACAGTCCATGACGGCAGATCTTGTGGTCCTTCGTTAGAAGCTCCTCCTGGCAGAATTCAGTGATCCCTCTCCTGCTCCGCCTCACTAATGAATCTACACCACCCGTCGCTCGCTTCCCTTCAACCGTCTTTGGTTTTGTCTGTCCCAAGAGCACTGCTGAAGTCACCGACTACACTCATCCTCTTCTACTTCTGTCAGTTTGGACTGTGTTATGAGACGTACAGAGGATCAAGGCGTGTGTAATCTTTACGTGGATTGGGAATTATTATGCCTTTGTAGACTGTTGGCCCTCATATCATAACTACCACTTTTCATCCCTGGGAACTTCTCTTGCTCTGAAGTCTGCTGTTCTGAAATTAATACAGCTTTTCCTACTCTACCCTCCTTCATGTGCACTTGTGTGGTATGCATGCATGTTTGCATGTGTGCTTATATGTGTGCGTATGTGCTTGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAGGGGGGTGTGCTTGGAGGCTTGAGGTTGGGGCCAGGAATCATCTTTAACCACTTTCATATCTTATTCATTGAGGTGGAGTCTCTTCTGTGGATAAAGCTAATCTTGCTTGCTCTTGGGATCCCCAGTCTCTGCCTCCTGAAGCTGGCATTACAGACAGGCCACCGTGATCAGCCTGTATTTACATGGGCTCTGGAGATCCGAGGTTGACCTGAACTGCTTGTGTGTCAAGAACTGTAACTGTTAGGCATCTCCCAGCCCACTTTCTTTTGGTTAGCGTTAAATTAGGATCTCTTACTCCCTTTGCTTTTTATCTACAAGATGTCTTTGTATTTAAAGTGGACTTTTTAGTTACAAAGACAATCTTGGTCTTTTAGTTGGTTTCTTTATTTGTCTTTGAGATAGGGTTTTATAGTACAATCCAGCCGGCCTCAAACGTGCAACCCTCCTGCCTCAGTTCCCCAACTGCCAGGATTGTAGACGAGAGTCACCATGCCAGATAGTTAGTGTGTTTAGACCACTGGCACTTGGGCTACTATTTTTAAGTTTTGTGGTTTGAGAATCCCATCTTCCTGCCATCTGACACTGGTTCATGTTTATTGCTCTTCAAAATGTCGCTTGCCTTTTAGTGTGCCTTGCAAGTTTTGGTTAAAAGATAGCATATGATGTCTCAGGTGGAAGGAGCTATCTAAATAAGTCTTTTATAATATAGTGGCAGAGTATGTCTAGTGGGCAATCTATAGCCCTGTGATTAGCCTGTGCTCTGGACTCTGAACTTCATCAGTATTTCTCAGACTTCCTCTTTCAGGTGGGGCAGGCTGCTAGAAAAGTGTCTGTCACCTGTGCAGAACAGTGGGGAATGGATTGGGTGGCTCCTTTATGTAAAGTAGGTTGTGGTCTGGCGAGCATTGCTCACAGAGTACACTGGTGTGTTTCACCATGGTTCCTGGCCCTGCCCCACCCTACCCTGCAGAAGCATGAGGGGACTTTGCCGTGCTTTTCCCCTCATTGTGAGGAAGGGTAGAACTCTTGGAAGTAATACTCAGTAAAGCTCACCTGTCCTTGTGAGTGACTGGGTCTCCTGGAGCTGACTCAGGTTGCTTGCACTGTGCCTCCAGCTGTAGGGCTTTCCTGCTGGCACTGGTCCCTTCAGAGGTCTCTGCTTCAGTGACGTCACCTCTCTTACGTCTCCAGCCTTGAGGGCAGGCATAGGTGTTGTGGCCTCGCTTCTCTGCTGGACCTAAGAGCTTTGAGTTTTGCTCAACTTACTTCTTGCTGAGGCAGAGGACGACTTCTAAGCTCTTTACTTACTGGATGAGAATCTCAAGATGGTCCTCATGGTTGTCTCATACCTCTCCATTGTCAGTCGAATCTGCCTTTCTTCTGTGTTGACAGTTCGGGTCCAAGGGGTTAAAGTCTTTGCTGTGCTATGGCAGCATCTGGAGGGCTGGGTGGAGAGAGAGGATTGTCTTTGTGTCTAGTGCACTTTCCCCATCGATTTTAATGACTTAAGAGGCAAGCAGGCATATACATAGGCTTATAAATTATTTTTAATGTCACAAATTTTTATGTAATTTGCCTCTGGGAATCAAGAACACTTTGAATAGTGATCACCTGCTTGAAATACTAGTGTAGCCTCCCCAGAATTCAACAAGATAGACCTCATTTGGTAGTATAAATGCCAATTTGTATTCTGAGGTCAGTCTGATAGCTAGCTTTCTTACTGTGTTAAAACCCTCTTTGGATCTTAAGAATCTGTTAACCCCGCGGAACACATTCATACTCAAAGTAACATTCCTATCTCACTGAAGGGACCTTGGGATCTGACGGTTGGAAGTCTTAACTTTGTGTGTAG
Seq C2 exon
GGTCTGGAGCTGTGCACTGAAGACACCAGGTCCTTTGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGGCCCACTGCTCTGAGAGACAGCCCCAGAAACAGAGGGTGGAGAAGACACATCCTGGCCTTTCCAAGATGCCACCTGAGTCCTTGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005886:ENSRNOT00000008887:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.466
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]