BtaINT0166405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030956 | ZSCAN21
Description
Bos taurus zinc finger and SCAN domain containing 21 (ZSCAN21), mRNA. [Source:RefSeq mRNA;Acc:NM_001035368]
Coordinates
chr25:36924066-36926534:-
Coord C1 exon
chr25:36926342-36926534
Coord A exon
chr25:36925299-36926341
Coord C2 exon
chr25:36924066-36925298
Length
1043 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TATCCTGCTTATTGTTTCAGATC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTGTCCCCACCTCCCCGTGAGCAGAAACGGTCATGGGAGAAGATGTCACCCTCAGGAATGGCGGAGGAGTCCCTGAGCAGCCCGCAGCTAGAGTCTGTGGAGACCAGTCACAGATACGAGTCCTGGGGGCCCCTCTACATCCAAGAGACTGGTGAAGAGGAGAAGTTCACTCCCGCGCTGAGGAAGGTTCGAG
Seq A exon
GTAGGACCATCTCTCAGGCCCCGGCTTGGTGCCCCAGGCCTTTGTGGTGGAAGAAACAGTCATCCTCATTCCTGATTGTCAGGAGGTCCCCTGGGCTGACAGGCAGAATGAGTTCCTTTCTTCCCTCAGGTGTGTCTCAGTCAGTCTTGGCGTGGGAACAAATGACACCCTTGAAGGGAGAGCTGAAGTTTGGTAAGGGGACTGTTCACGGAGGTGAGGGCAGGTTGAATGAACTGATAAGAGATGGTGCTGGTTCATTTGTTCATGACTTAGCGGCCCTGCTGTCATCAGTTTTCAGTGTGGATTTCTCTTTTTCTCCTTTTCTGTGTGTGGATGGGTAGGTGGACTTTTAAGAGGGGTGACTGCTTAGTGAAATGGTCTAAAAAAGCTTAATGACTTCAGTCAGATTTCAAGAGTTGCTTTGTAACTGAGAGAATGACAGGAAACATGTATTGATAGTTTAAATGATGAAAGTTAAACCCTCATAGGAGTTAAGTACTGTCATTCAAACTACCAAGGATCTGGGATTAGAATGATTATAAATGGACCAAACGTTCTCTTTTATTGCTATTAAATACATTCAACTTCTGTGAGAATCCGAATTTTGTGAGTTTGCCATTAGCCTCTTCGCCCTTAATTATGCTTTTTATTTCCTGCTACCAACTTTGACCCTTCTACAATCTTTCTTTCTTGTTTCTTTCTGCCTGAACATCACCCAGCTTCTTTGTTGCTGTCTCAGTATGCTTAGTTTTGCCTGAAGTTTTGCCTAATTTCCCTCTATATATGAAGTTCTCCTGGCAGACAGCGCTGTGTACTTCTCATGCCATGATAGCTTCTGGTAGGGGCTTGCATGAAAGTCTGGCGTTGTAAACTAGATCTGATAATGACCTGTTTGTCTTAAACGTGATACTGTGACTTTGTATAATGGTATTTGGTTACCCCTTAGAATCCATCAGTGTCACCTGATGGTTCTGTTTCTCATTTAGGTTTTTTTCTCATGACAGGAAGCAACTGACATGTCCTTATCCTGCTTATTGTTTCAG
Seq C2 exon
ATCGTAAGTCGAAGACCCAGAATGAGGAATCAACAGATAAGGAGGGAAGTTCTGAAGAATCTCATGCAGAAGGATTCAGAAGGGATACACTTCCCATGATTATCACCGATAAATGTGAGGCCAGGTTAGAAAGGCAGTGGGTAAATCCAGAAAAGGAGAGAGGAACAAAAACCCCCCTCCAAGACAAAGGTTCTGCTAAAGGTAGAGAAGTAGTGACGAAACCTGCCCCGGGAGAGAGACGTTACATATGTGCTGAGTGTGGGAAGGCCTTTAGTAATAGCTCCAACCTCACTAAACACCGGAGAACACACACTGGGGAGAAACCATATGTGTGCACCAAGTGTGGGAAGGCTTTCAGCCACAGCTCCAACCTGACCCTTCACTACAGAACACACCTGGTGGACCGGCCCTATGACTGTAAGTGTGGGAAAGCCTTCGGTCAGAGCTCAGACCTCCTTAAGCACCAGCGAATGCACACTGAAGAGGCCCCTTACCAGTGTAAAGATTGTGGCAAAGCCTTCAGTGGCAAAGGCAGCCTCATTCGCCACTACCGAATACACACCGGGGAGAAGCCGTATCAGTGTAACGAGTGTGGGAAGAGCTTTAGTCAGCACGCGGGTCTTAGTTCTCACCAGAGACTCCATACTGGAGAGAAGCCGTATAAATGTAAGGAGTGTGGGAAAGCCTTCAACCACAGCTCCAATTTTAATAAGCATCATAGAATCCATACTGGGGAAAAGCCCTATTGGTGTAGTGATTGTGGGAAAACCTTCTGTAGTAAGTCCAATCTTTCCAAACATCAGAAAGTCCACATTGTAGAGGGAGAAGGATCTTAACCATCAGGTACGATCTTTTGGTGGTTTTTGTTTTTCTTACTTTAGAACGTGAATGCTAGAGATAGCCCAATAATTGCAAAGTTAACTATGGAGTAGATTTTGTTTGTTTGACTCAATGTGAAGGGGATGGAGTGAGAGCTCAGGCAGGGACAGGGTGGGTTCCTCACCTGCCCACCAACTCACTGGGGCAGGGTCCCCTCACCACACTTGACGTCCCATACACCATGCCGGCATTGCCTTCTGTATAGTTACACTGCTGTGTATCCAGTATAATTAAAGAAAAAGCATTAAAACTGTTCAGCTGTTTTAACATATACTCAAGATTATGACTTGTAAAGAAATGAGCCATGTTGAACACAGTTTAATCTGATTCAGAATAAACTTTAAAAGTTCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030956:ENSBTAT00000022287:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCTAGAGTCTGTGGAGA
R:
ATGTAACGTCTCTCTCCCGGG
Band lengths:
358-1401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]