RnoINT0169480 @ rn6
Intron Retention
Gene
ENSRNOG00000039234 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:RGD Symbol;Acc:1309981]
Coordinates
chr12:19269429-19277910:+
Coord C1 exon
chr12:19269429-19269618
Coord A exon
chr12:19269619-19276696
Coord C2 exon
chr12:19276697-19277910
Length
7078 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTAACCCACCTGTTTCCAGGTT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTCTCATCTCCAAATGAACAGAAGCAGTCTTGGGAGAAAATATCAACTTCAGGAACTGCAATGGAGTCCTTAAGCAGCACTGAGACCCAGCCTGTGGATGCCAGCCCTAAATATGAGTTTTGGGGGCCCCTGTACATCCAAGAGACTGGTGAAGAGGAGGTTTTCACTCAGGACCCAAGAAAGCGCCAAG
Seq A exon
GTAAGGACCCCTCTCAGGGTCCAGGAGAGGGGTAATATCTGGGTCGGCCTGACTGGTAGAGCAGAAGGCATGCACTTCCCTCTCCCAAACCCTGTTGTCTCAGGCAGGTTCCCAGCACTAGGCCAGGCAACACGCTGTAGGAGGTTGAGTGGAGTGAGCTCAGTTTGAAGAAGGAGCGAGACCGATGGAGAGATAGGGACAGGTTGGATGAGCCAGTGTAGCACTAAGCTGGCAAGGTATAGCTGCCTGCCTGTGAGTCCGAAGGGCTAGGAAGGAAGACCTGTTATTGCCAGAACCAGACAAGAGCTGAGCCTTGGTAGGGATGGAAAGACTCACATGGTAGGAGCTCTGCTCCAGGTCTTGCCACTGGGTAAAGAGAAAATGGAATAGATGCCTCATTTGTACACTGTTCCTGCCCTTACGTCTTTTGGTGTACCCACTGGCATACTCAAGTACAGCTGGAAAACATGGAAAGTGTTAGGCCTAAGGGTAGTTCCTGGGATTCAGAGCAGAACAGACTGGGTCCAGGAAAGGTCAAACCTTTTTGAACCTCTGCAGACTTAACACAGGCCAAAAGTTAGGGTAGGGAAAAGCAGCCCATGTTGTAGAGTGCTGGAGCAGCATGCAGGAGGCCCTGGGCTGCATCCCTGGACCACTTAAACCACATATAATGGCACTCACCTGCAACCCCAGCACTCACATTCAGGCTCAGCCTTGGCTCCATGGAGAATTCAGGACCAGTCTGGATTTCTTGAGACTTCGTCTCAAAAAAGTACATTAAGGCAACTAGCTGTTCCCTAGCTCAGATCTCCACAAATCATGATTTACGTAATACATAGCAGCCTTATTTTACACTGGTCGTTTCTGTTCTTATTTACCTTCATTTACATGGAGTAAAAACATCTGCAAAGAATAATCAAACTTACATGTTGGTGAAAATACAGCACATTGTTCCAAATCTTGTTCTTACCATGTTTCATGGATAGGTATGTTCATGAGCAGAGCCATAGGCCTGAGAAATTGCCTGAGTTGCTTACAATGTCCTAGACACTTGAAATTCCCTCTTGGAAAGCAAGCTTTGAGCCCTGTTAAACCATATTCTTGTGTCAGGCATGATGGCACACACCTCTAGTTCCAGCACTCGGGAGGCAGAGGCCATGAGATCTCTATGCAGGTCAGCCTGGCCTATGGAGTGTGCTTTAAAACAACCAATGGTATGTAAAGAGACCCCGTCTCAAAAAGAATAAAACAAGCAGAAAGCTGTCCTTAGGGCTGGAGATGTGACGCAGTTAGGAGCAGTAGCTGCTCTCTCAGAAGACCCTGGTTCACGGTTTACTTTCAACGCCCACTTCCAGTCCCACGGATGCCTGCACATACTTGATGCACATTCAGACAGGCAGGCACATAGTTCAAAATGATTGTTTAAAAATGTACATCTTAGGACTGACGGGATGGCTCAGCAGTTAAAATGCTTGCTCTGGAAGCCTGGAGACCTGAGTTCCATCCCTGAAACCTATCTGATGGAAGGAAAGAACTGACCTCCACACGCACAGTTTCAGGAATACCTGCACACACACACAGTAATTATTTCTATTTATTAACTAATTTATTCATTCATTCATTTGGGCAGGGTCCCACTATGGGGTCTTGGCTGGCCTAGAACTCACTACATAAACCAAGCTGGCCTCAGACTCATAAAGAGCTACCTGCCTATTCCTTCTGAGTGCTGGACTCAAGAGTGTGCACACCACACCTGGCCTAAAGTTTTTTTTAGAAAGCCACATTATAGGGGGCTGGAGGGAGTTGGTAGTTAAGAGCACTCGTTACTCCTGCAGAGGGCCTGAGGTTGGTTCCCAGCACCCATGTGGTGGCACGCCGGCATCTGTAACTCTAATTCTAGGTTGATCTAGTTCTTTGTTTTGACTCTGTAGGTACCAACATAAATGTGGTAGACATAGATACTTGGAGACAGAGCACTCATAAAACAAGCAAATCTAAAATAAAACATAAAAGTAAACAACAAAACTCTCACATTCTACAGCCAAGTGTGGTGTCACGTATCCTGAAATCCTAGCACTCAAAAGGCCAAGGTGGAAGAGTTCAAGGCCAACCTGAGCTATATATATATTGACACTCCGATTTAAGAAACAACAAAATCGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAACTGCTCTTCCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAGTGGGGTTGGGTGTGTCTGAAGACAGCTACAGTGTGCTTATATACATTAAGTAAATAAATAAATCTTTAAAAAAAATCAAACGTTTAAAAAAAAAAGAAACAACAAAATCATATTGTTTGAGAAACATAAAAACTGAACTATTAAAAAACCCTGTTAACTGTTTTTCATTGTTTGGAATTATTAATACCGTCTTCCAGTTACCTGAGGCTTCCATGGACTATAATTATACATGGAGAAAACCAAAAACATAACTGCTCATAGTTCTTGGAAGTCTGAAGCAGGAGGACTGCCGTGAGTTTAAAGCCACCTTGCCTTCCTTTGTGAGGTATCCACTAGAGAAGACCACTTAGAAATGGGTTCAAGCCACGTGAGAGAAAGTCTTTATGTTCAGGTGCAGACACAAGTGCAGTCTGTAGCCTTTCTTAGGCTGTGCTTTTAAGAATAAAAACCACATCCTTGGTTGACACCTCAGCCATAAAAGAGCATTAGCCAGCCAAAACTCCAGGCTAGAACATTTAGGGACTTTCTCAGAACTGTGGACTTTAATGGATTCCATCTTTGTTCTTGTTTCGGAGGGTGTTCCTGCCTGTGTGCTGAGTTCTAAAGCTTGAATGGTATTTCCATCATGGCTTCAGTTATGCTAAGGCCTCGGGGACTGTTGCATTCCTAGTGTGTTCCAGACCCTGCCCTACGCCCACACCCCCTCCAAAAAAGAAGGAAGACCCTCAGTGGTAGTTTGAGTAGGTTTGGCCTCCATGGACTCATGCATTTGAATGCTTGGCCCAAGGAATGGCACTGTTAGGAGGTGTGGCCTTGTTGGAGGTGTCACTGTTGTGGTGGGCTTTGAGGTTTCCTATGACTAGGCACCACCCAGTGTGTTATCAGAGTCTCCTCCAGAAGACAGTCCCCTTCTGCTGCCTGCTGATTAAGATGTAGAACTCGTGGCTCCTCCTACACCATGTCTGTCATCACACCACCATGCTTCCCAACATGATGATGATGGACTAAACCTTTCAGACCGTAAGCCATCCCCAATTAAATGTTTGTCTTTTGAGAGTTCCTAGATCATTGTGTTCCTTCACAGCAGCGAACCCCTAAGAAGCTTGTACCAGGGACTGGGGTGCTGCTGTGATAGGCTTGGCCGTGCCTTTGTTTGGAGGAATGTGGAGTTTGGAACTTTGGATTAGCAAAGCAGTGGAATGCTTTAAGTGGAGTTTAATGGGGCATACTAGTAGGCGCATAGAGCACAGTGAGTGGTGTTGAGGGTGACTTGAACTGTGGGGGCCTGGCTCAGGGGGATTCAGAGGAAAATAATTTTACTATGTTGCCTAGAGATTGTTCTTGTGATATTTCAGTAAAGAATGTAGCTGCTTTTTGCCCATGTCAGAGTCTTTCTGAGGCTAAGGTGAAGAGACCAGATTAATTGCACTGACAAAGGGTATCTCAAAGAAACCTAGCATAGACTCTGTCATGTTATTCACTCTTATGAGGAGCATTTTGATCAAGCATAGCAAACTGCGAAAGGAAAGACCATTGTTGAAGGTGCAGCATCAGTTGCAATTGAGGCTTGGCACCAGGAAGAAAGACTATGGGAGGCTATCGTTCAAAGTGAAGCCTAGCTGCAGCGGAAGACCCCAGTGTATTCAAGCTGCCAGTCCCCTGGCATGACCCAAGCACAGCAGCAGCAGTGGAGTGGAGTCAGCCAAAGCCTAGAGTGCTGCAGAGGGCAGAGCTGGGCATTTCATGGTGCTAAGAGATGCCAGAGCCTTGGGATACTTGTCAAGGAAAGCTGCTAACACGGAGGGAGTGGAACCAGCACAAGAGAGAGAGGTGTAGTCAGCAAAGCTGGGACAGAGTTGGACGTCAGACATGGAGATGCAGAGTTTGGAGTTTGCTCAGCTGATTTTGGTCTTGCTGTGGTCCTCACTATGACATTTTAGAATGGTAGTGTATATCCTGTCATGGTGGGAGTATATGATCTGCTTCTTGATTTTGATTTTATAAGGGATTACAGTTAAAGGATTGCATGAGTCTCAGAAGAGATTTTGAACTTTGGACTTTTAAACGTTGTTGAGCTAGACTGTGGGGACTTTAGAAGCTGAACTAAGTGTATTTTGCATTATGCTATAGCTACTAGCCTGTGGGGACTGGGGAGTGGAACGTGATAGTTTGATAGGCTTGGCCCACAGGTAGTGGCACTATTAGTAGGCGTGGCCTTGTTGGAGGGGGCGTGGCCTTGTTGGAGGGGGCGTGGCCTTGTTGGAGGGGGCGTGGCCTTGTTGGAGGGGGCGTGTCACTGTCTCCGTGGGTTTTGAGGTCTCCTATGCCTCCACTCATGCCCAGTGTGGAATCAGAGCCTCCTCCAGAAGACAGTTCCCTTCTGCTGCCTGCTGATCAAGATGTAGAATTTGTGGCTCTTCCAGCACCATGTCTTGCCACGCTTCCCGCCATAATGATAATGGATTAAACCTTTGAAACTGTAAGCCAGCCCCAATTAAATGTTTTTGTTTTTAAGATTTGCCTTGCTCATGGTGTCCCTTCACGGCAAGGAAACCTTAAGATACCCTCCTTCTTGTAGGTTAAAACATTCCCCCACAGCACCCAGTTTTAGAATACGATCACTGTCTTCTACCTCAGTCTGCTCTCTTCTACACTTCTGTCTCCTCTGCCTTCCTTTGGATTCTGAGACTCTGGCCCTTTGAAACTTGATTCAGACTGGAATAGCCAACCTCCCAACTCAAACCTCTGCTCTTGCCAGCACCACACAAGTGAGTACAGAATACAGATCATTGATAGGGATGTACTCCTGACTGACCACACCTTGACCGTTGTCAATAGATTTTGGACCCAAGGTATTTTTTCACATTCATAGATATGAGTTAAGAGCTGGAATGTTGTTGAAATTTTTAATCCCAATCTGGGGTTTCTACCCTACCTTTGACCATTTAGTTCCCAGATAAAAGACACACAACTTTTATTGTTTACAATAATTTCCTTGACAGGACAAGAGCTGGGCAGAAACCTCCCCTCTGTGCCACTAGAATCTACTTTGCTATGGATAACCCTCAGCTAATTGGCCGGCTCTCAGGGCCACGTTTTCTTGACTCCTAACCTGTAGCAGCTTCTCCTTCCTCCTCCTTGGAGAGATGACTCAGCAGATCAACAGTTGCTGCTCTTACAGAGGACAAAAGCTTCAGTCCAGTTCCTACATTCACACAGTTGCTCACAACTGCCTGGGACTCCCACTTAAAGAGATCTAATGGCCTCTTTGGCCTTTGCAGACACCCTCATATGTGTGGCAGATTCATGGGCATAAGAAATGAGACACACACATACATGAAAATAAATCTTTTAAAGACTGGGATAATTGTGACTAGAAACATGGGTCTACAGTTACAAACACTTGGTACTTTTGCAGAGGAACATTTTCAGTTCTCAGCACCCATATGGTAGCTTAAAACAGTCCACAACTGCAGTTCCAGGTGAGCTGGTCCCCTTTTCTGCCCTCCACAGCACCAGGCATGCACGAAGCACACTTACATACATGTAGACAAAACACCCACACACAAAAAACTTGTTTGTTTTCTTAATTAAAGTAGGCTACTGGCCTCAAAAGTGCTTAGTAAGAGAAGGTGACCTTGAACTTCTGGTCCTCCCTCCACCTCTCCCAAGTGCTGGGATTAGAGATAAGACCACTGTACCCTGCTTCCTATCTGTAGGATTGTGAATCCGTGTATCACAGAGATGGGCCAATTTTTACCACAGCTCTATTCCCAAATATAGATCCAAAATACAGAAGCAGCCTATGAGTCAATGGATAAAGAAAATGTATACACACACAATGGAATTGTATTCAACTGTAAAGACTTAAGGGTAAATTATGACAGTTGAAAGAAAAAAAATTAAAATAGGGTAAATCATCTCCTTCCATTCATTGCCCTTTTCATAGTCACTTGTCAGTTCTACACAAAGTGGAGAGCCAGGAAGTATTACCAGAGCTGGAAATGGGCTGTTTGTTGTTGTGTTGTCATGGGGTCATTGTGGCTATTCTGTTTTGTGTTTGTGACTTGTTTTTTAATTTTGTTTTTGTCTTTTGTTTTGGTCTCTACCTGGCCTGGAACTATGTAAACTAGGCTGCCGCAAAAGACAGAGATGTGCCTGCCTCTGGCTCCCAAGTGCTGGGATAAAAGACATACATCACTAAAGTTTTAGTGCCCAGTTTAGAGAAAAGGCTTTTAAGTGCTCTTAAGAGAGAGGAGTTGGCAATGATGGCCTCGCTTAAAGTCTCAAAGAAACTTAGGTGCCCTGAGAAGGTGCACTGGATGGGAAGAGGAAGCCAGTAGCACAGGGTACAGAGGAAATTGGCCCGTCTGTCTGAGCTCTGAGTGGATCTCAGTCAAACCTAAGGCGTTGAAACCTGGCGTTTACCTGGCTAGAACTTGAGCTTTGACTTTCCTTTATCTGCATGACTGAGAAACCCTTAAAACCAGAAATTCTTCACGTAACTGTTGGCTCTGAGTACTTTGCAGAAGCGAGTGTGAAGCCACAAACAGAACCTCAGTGTAATTTAGACTGTTCCCAAGCGTCCAGGAGGGCGGAGTGGGGAGAGTCTTTCTAGAGACTGAATTGTAAAATAATCAGGTGATTGACATAGCAGGCAGGGTCTTGTGAATGCAGACCATAATAGATGGGACAAGGGTTTTATTTTATTGCTGTTAGATTCACACGTCACATCTACTACCTCACCTGGTGGTCCTGTTCCCTGCAACAGCTCCCTCAGAAAAGGAACAACTAACACGCTTAACCCACCTGTTTCCAG
Seq C2 exon
GTTTTAAATTGAATCCGCAGAAGGAGGACTCAGCAGATGAGCAGAGAAGTTCTGAAGAAGAGTCTCATGCAGGTGGACTCAAAAGAAACATCATGCCCATGATCACTGCCAATAAGTATGGATCGAGGTCAGAAAGGCAGTGGGCCAACAACCTGGAAAGGGAGAGAGGGGCAAAAGCCTCTCTTCAAGACACGGGATCCAGGAAAGGGGCAGAACCAGCGTCTGCTAGGCCTGCTCCAGGAGAGAAACGTTACATATGTGCAGAGTGTGGGAAGGCCTTTAGCAATAGCTCAAACCTCACTAAACACCGGAGAACACACACTGGGGAGAAGCCTTACGTGTGCACCAAGTGTGGGAAGGCTTTCAGCCACAGCTCCAACCTTACCCTTCATTACCGGACACATCTGGTGGACCGGCCCTATGACTGTAAGTGTGGGAAAGCCTTTGGGCAGAGCTCAGACCTCCTTAAACATCAGAGGATGCACACAGAAGAGGCGCCCTATCAGTGTAAAGACTGTGGGAAAGCCTTCAGTGGGAAGGGCAGCCTCATTCGACACTATCGCATCCACACAGGGGAGAAGCCCTATCAGTGCAATGAGTGTGGAAAGAGTTTTAGTCAGCATGCAGGTCTCAGTTCCCATCAACGCCTGCATACAGGGGAGAAACCCTATAAGTGTAAGGAGTGTGGCAAAGCCTTCAACCATAGTTCGAATTTTAATAAGCATCACAGAATCCATACTGGTGAAAAACCCTATTGGTGTAACCACTGTGGGAAAACCTTCTGTAGCAAGTCAAATCTTTCCAAGCATCAGAGAGTCCACACTGGAGAGGGAGAGGTACAGTAAGTGTCCATTTCTGTCTGTTGTTATTGTTGTAAACGTTAGAATGTGAATGCTAGGAAGAAGCTCTGTAATGCATTTCATGTTTGATAGTAGGTTTGGCTCTAGTCATCGAGGGGTGCCTTGGAGGGAGAGCTCCACAGCAATAGAGTAGACAAGAGAGGTCTACAGAGCAGCCGGGAGCTCCACACTGGTCACCTCTACCAGCAGGGTCCCTCCTCACACTCCAGGCTCCAGTGTACTGTGTGTCCAGTATAGTTAAGGAAGAGACATTAAAATTGTTTAACTGTTTTAACATGTATTCCACAGTTGTAGTTTGTAAAGAATTGAGCCACCTTGAACAGTCTGATTCAGAATAAACGTATAGCATCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039234:ENSRNOT00000001810:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.388
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]