MmuINT0180852 @ mm9
Intron Retention
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138567682-138575487:+
Coord C1 exon
chr5:138567682-138567874
Coord A exon
chr5:138567875-138574266
Coord C2 exon
chr5:138574267-138575487
Length
6392 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTAACCCACCTGTTTTCAGGTT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTCTCATCTCCTCCAAATGAACAGAAGCAGTCTTGGGAGAAAATGTCAACTTCAGGAACGGCAATGGAGTCCTTAAGCAGTACTGAGACCCAACATGTGGATGCCAGCCCTAAATATGAGTTTTGGGGGCCCCTGTACATCCAAGAGACTGGTGAGGAGGAGGTTTTTACTCAGGATCCAAGAAAGCGCCAAG
Seq A exon
GTAAGGACCCCTCTCAGTGTTCAGAGAGATCTATAGCTCCAGTTGAGAGGTCACTCACCTCTGATTGACCTGACTGTAGAGTAGCCTAGGCAGAAGGCATGCATTCCTCTCCCAAACCCTATTGCCTCGGACAGCCACCCAGCACTAGGCCAGGCAGCGTGCTTGCAGAGGGTTGACTGGAAAGAGCTCAGTTTTTAAAAGCAGTGAGACTGATTGAGAGAGATGGACAGGTTGGATGAGCCATTGTAGCACTAAGCTGGATGATAGTGGCAAGGTATGGCTGCCTGTGAGCCTGAAGAACCAAGAAGGAAGACCTGTTATTACCAGAACCAGATAAGAGCTGAGCCTTGCTAGGGAAGGAAAGAGTCACATGCCAGGAGCCCTGCTCCAGGTCTTGCCATTGGGTAAAGAGAAAATGGAGAGCCGGGCGTGGTGGGGCACCCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTATACGGAGAAACCCTGTCTTGGAAAAAAAAAAAGAGAGAGAGAGAGAGAGAAAATGGAATAGCCTCATTGTTACACTGTCCCACATCATTTGGCGTACCCACTGGCAGCAGACTCAAGCACAGCTAGACAACATGAAAAGTGTTTAGGCTTGAGGGTACTTTCCTGGGATACAGAGCAGGATGGACAGACGAGATCTGGAAAAGTTGAAACCTTTTCCAACCTCTGCAGACTTCAGAAGTCAAAAGCTAGGGTAGGGACTGGAAATGCAGTTCACTTTGTAGAGTGCTGGAGTAGCATGCAGAAGGCCCTGGCTTCCATGCCCTGGACCAATTAAACCATATGTGGTGGTGCACACCTACAACCCTAGCACTCAAATTCAGGGTCAGCCTTAGCTACATGGAGAATTCAAGACTAGTCTGGGTTTCTTGAGACTCAAAAAAAGTACATTAGGACAACTAGCTGTTCCCTAGCTCAGATCTCCACAAATCATGATTTGCATAACAGCCTTATTATATACTAGTAGTTTCTGCTCTTTTTTTGGTTTTGTTTTGTTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCAAATGCTGGGATTAAAGGCGTGCCCCACCACTGCCCGGCTTAGTTTCTGCTCTTAAATACCTTCATTTACCTGGAGTAAAAATATCTGCATATAATAATCACATTTACATGTTGCTGAAAATATAGCACATTGTTCCAAATCTTGTTATTACCATTTTTCATGGATACAGTATGTTCATGAGCAGAGCCATAGCCCTAAGAAATTACCTGAGTTACTACTTACAATGTCCTAGACATTTAAAATTCCCTCTTGGAAACAAAGTTTTGAGCCCTGTTGAAAATATATTCTCGTGCCAGACATGATGGCACATACCTTTAGTTCCAGCACTCAGGAGAGGCAGGTATGATCTCTATGCAGGCCAGCCTGGTCTATAGAGTGTGTTTCAAAACATCCAGTGGTGTGTAGTGTCTCAAAAAGAACAAAACAAACAAAAAGCTATTCCTAGGGCTGGAGATGTGGCTTAGCAGTTAGGAGCAGTAGCCTCTCTCACAGAAGACCCTGGTTCACTGGTTTTCTTTCTAGCATCCACCTTGAGTGACTAACAGCTAGCTGCCTTTAACTGTAGTTCCTACGCTTCCAGCACCCCTTCTAGTCTCCAAAGACATCTGCACGTATGTGATGCACATTCAGACAGGCAGGCCCATAAATCAAAAAGATTACTTAAAAAAAAATGAGCATCTTGGGCTGGAGAGAGGGCTCAGAGGTTAAGAGCACTGACTGCTCCTCCAGAGTCCTGAGCTCAATTCCCAGCACCCACATGGTGGCTCACAACCATCTGTAATGGGACTTGATGGCATTTTCAGGTGTGTCTGAAAGCTGCAACATACTCATACACATAAAATAAATAAATCTTATAAAAAAATGTACATCTTAGGGACTGACAGGATGGCTCAGCGGTTAAAATGCTTGGTCTAAAAGCCTGGTGACCTGAGTTCCATCCCTGAAACACAGATGATGGAAGGAGAGAACTGGCCTCCACGTGCTCAGTTGCAGGAATGCCTTCAGACACACAATAATTATTTCTATTTATTAATTAACTCATTCATTTGGGCAGGGTCCCACTGTGTGATCTTGGCTGGCCTAGAACTCACTGCATAGACCAAGCCGGCCTCAAACACAGAGAAAGAAATCATATTCTCTGAGAAACATAAAAACTAAACTGTTTAAAAAACAACAACAACAACAAAACAGCTGGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCTGGAGGCAGAGGAAGGCGGATTTCTGAGTTCAAAGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAGAAAAAAAAAACCCTAAACTGTTTTCATTGTTTAAAATTGTTAATGCCATCTTCCCTGGGTCTTCCATGGACTATAATTATACATGAAGAAAACTAAAAACATAACTGCTGATAACTCTTAGAAGTCTGAAACAGGAGGACTGCCATGAGTTTAAAGCCACCCTAGGCCTACCTTTGTGAGGTATCCACCAGAGAAGACCACTGAGAAATGGGTTCAAACCAAGAGAAAGTCTTTATGTTCAGGTGCAGTCCCTAGCCTTTCTCATGGTGTGCTTTTAAGCATAAAAACACATCCTGGGTTGACCCCTCAGTTAGCAAGAAGAGAACATTAGCCAGCCAAAAAGCAAGCTGAACTTCTCAGAACTACAGACTGTAATGGATTGCATGCTTGTTCTTGTTTCAGCAGGTATTTTGCCTGCATGTTGAGTTCTAAAGCCTGAATGGTATTTCCATCGTGGCTTCAGTTGTGCTAAGGCCTGGGGAACTGTTGCACTCCTAGTATGTTCCAGGAGAGTCTTCAGAGCAAGACCTTGTCTCCCTCCAAAAAAGAAGGAAGACCCTCTGGTAGTTTGAGTAGATTAGGCCCCCATGGGCTCATGTGTTTGAATGCTTGGCCCAGGGAATGGCACTATTAGAAGGTGTGGCCTTGTTTGAGTAGGTGTGGCCTTATTGGAGGAAGTATGTTACAGGTGGGCTTTGAGGTCTCATATGCCTAAGTCCCACCCAGTGTGGAATCAGAGCCTCCTCCAGAAGACAGTCCCCTTCTGCTGCCAGCTGATCAAGATGTAGAACTTGTGGCTTTTCTAGTACCATGTCTGCCTTCACACTGCCATGATGAAAAATGGACTGAACCTCTGAAACTGTAAGCCAGCCCCAATTAAATGTTTGCCTTTATAGCCTTTATAAGATTTGCCTTGGTCATCGTGTCTCTTCACAACAATGAAATTCTAAGATACCCTCCCTCTTGCATGTTAAAACATTCCTCCACAGTCCCCAGTTTTATTTAGAATATGATCATTCCCAACTCAAACCCCTGCTCTTGCCAGCACCACAGGAGTGAGTGCAAAATATAGATCGTTGATAGGCATATATATACTCCTGACACCTTGAACCATTGTCAATAGATTTTGGACCTACGGTACTTTTTCACATTTGTAGATAGGAATTAGAGACTGGATTGTTGTAGAAATTTTTAATCCCAATCCGGGGGTTTCTACCCTACTTTTGACCATTTAGTTCCCGGTAAAAAACACACAACTTTTATTATTTACAATAAGTTTTTAACAGCACAAGAGCTGGTCAGATATCCACCCTCTGTGCTATTAAAATCTACTTTCCTGTAGATAACCCCGAGTTATTACTATGTTTCATTTGGGCTGCTCTTAACTCCATTTGGCCAGCCCTCAGGGCCACGTTTTCTTGTGACTCCTAACCCGTGGTGGCGTCTCCTTCCTCCTTCATGGAGAGATGGCTCAGTAGATAAACAATTGCTGCTCTTACAGAGGACAAAAGTTTCAGTCCAGTACCTACATTAGGCTGCTCACAACTGTCTGTGGTTCCCACTTTAAGAGACCTACTGGTCTCTTTTGGCCTCTGCAGGTACCCACATATGTATGGCAGATAAATGGGCATAATAATAAATGAGACACACACATAAAAATAAATCTTTTTAACGACTGGGATAAATGTGACTGGAAAGATGGCGTTGCAGTTACAGTCACGTGCTCCTTTTGCAGAGGAACCATATTCAGTTTCCAGCACCCACATGGCAGCTTAAAACAATCCAGAACTGCAGTTCCAGGTAATCTAGCACCCTTTTCTGGCTTCCACAAGCACCTGGCGTGCACGCAGCATGCTTACATGTATAGGCAAAACACCCACACACAAAAAAACTTCTTAATTAAAGAAGAATACTGAGCTGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAGCCTGGCCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAAACAAACAAAGAAAAGACCAATACTGGCCTTAAAAGTGCTTTGTAAGAGAAGGTGACCTTGAACTCCTGGCCCTGCTTCCACTTCCTCCCAGGTGCTTCTTATCTGGAGGCTTGTAAATCAGCGTGTATTCTGCAGCTCTATTCCCTAAAATTTATCCAAAATATGGAACCAGGCTACGAGTCAACAGATAAAGAAAATGTAAGAAAATGTATATACACACAGTGGAATTATATTCAACTGTAAAGGCTTAGGAGTAAAATTATGACAGTTGGAAGAAAAAATTCAAAATAGGATAAGTTGTCTCCTCTTCCATTCATTGCCCTTTTCATAGTCATTTGTCAGTTCTACACAAAGTGGAGAGCCAAGAAGAAGTATTGCCAGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGGACCTGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGTTCACAACCATCTGTAACAAGATCTGATACCCTCTTCTGGAGTGTCTGAAAACAGCTACAGTGTACTTACATATAATAAATAAATAAATCAAAAAAAAAAAAAAAAAAAAAGAAGTATTGCCAGAGCTGGAAATAGGCTGGGGTTGTTAGGGGGTTGTTGTGGTTATTGTTTTGTGTTTGTGAGTTGGTTTTGGCTTGATTTTGTTTGTTTTTTTCTCTACTTTACCTGGCCTGGAACTATGTAACTAGGCTGCCTTAAAAGACAGAGCTCTGTCTGCCTCTGGCTCTCAAGTGCTGGGATAAAAGGTGTGCACCACTAAAGTTTTAGTGCCCAATTTGGGAAAGAGGCTTTTAAGTTCTCTTAAGAGAGGAGAACACAGGGCCCCCAATGGAGGAGCCAGAGAAAGTACCCAAGAAGCTGAAGGGGTCTGCAACCTGATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTACCTGCATATGTAGCAGAAGATGGCCTAGTAGGCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCTCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGGAAGGGTATAGGGGACTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAATTAAGAAAAGAAAAAAGAGAGAGAGGAGTTGGCAATGATAGCCTTGCTTAAAGTCTCAAAGAAACTTACACACCCGAAGAATGTATGCTGGACTGGAAGAGTGAGCCATTAGCACAGAGTACAGGGGGAAGCTGGCCAAGCTGCATGAGCTCTGAGTGGAACTCAGTCAACCCTAAGGCATTGAAACCTGGTATTTACCCTGCTAGAACTTGAGCTCCGACTTTCTTTTTTATCTGCATGACTGAGAAACCCTTCAAACCAGAAATTCTTGACATAACTGTTGGCTCTGAGTATGTTCCAGAAGCAAATGTGAAGCCACAGACAGAATGCCGCAGTGTAATTTAGACTGTTTCAAGCATACAGGAGGAGAGAGTAGGGACAGCCTTTCTAGAAACTATGAATTGTGAAATAATCAGGTGATTGACATTGGAGGCCAGGGTCTCCTGTGAATGAGACCATAAACTAGATGAGACAATGGTTTTATTGCTGTTAGAGCCATTCACACTCACATGACACAGGGCCATCATCCTTTCAAACCCATCTACTACCTCACCTGGTGATCCTGCTTCCCTGCAACAGCTGCTTCCTCAGAACGGAACAACTAACTAACCACCCTTAACCCACCTGTTTTCAG
Seq C2 exon
GTTTTAAATCGAATCCCCAGAAGGAGGACTCAGCAGATGAGCACAGAAGTTCTGAAGAAGAGTCTCATGCAGACGGACTCAAAAGAACCGTCATCCCCATGATTCCTGCCAATAAGTATGGGTCACGGTCAGAAAGGCAGTGGGCCAACAACCTGGAGAGGGAGAGAGGGACAAAAGCCTCTCTTCAAGACACAGGTTCCAGGAAAGGGGCAGAGCCAGCGTCTACTAGGCCTGCCCCAGGAGAGAAACGTTACATATGTGCAGAGTGTGGGAAGGCCTTTAGCAATAGCTCAAACCTCACTAAGCACCGGAGAACACACACTGGGGAGAAGCCTTATGTGTGTACAAAGTGTGGGAAGGCTTTCAGCCACAGCTCCAACCTTACCCTTCATTACCGAACTCACCTGGTGGACCGGCCCTATGACTGTAAGTGTGGGAAAGCCTTTGGGCAGAGCTCAGACCTCCTTAAACATCAAAGGATGCACACGGAAGAGGCGCCCTATCAGTGTAAAGACTGTGGGAAAGCCTTTAGTGGGAAGGGCAGCCTCATTCGACACTATCGCATCCACACAGGGGAGAAGCCCTATCAGTGTAATGAGTGTGGAAAGAGTTTTAGTCAGCATGCAGGTCTCAGTTCTCATCAGCGTCTGCATACAGGGGAGAAACCCTATAAGTGTAAGGAGTGTGGCAAAGCCTTCAACCATAGTTCAAATTTTAATAAGCATCATAGAATCCATACTGGCGAAAAGCCCTATTGGTGTAGCCACTGTGGGAAAACCTTCTGTAGCAAGTCCAATCTGTCCAAGCATCAGAGAGTTCACACTGGAGAGGGAGAAGTCCAGTAACGGTCCATTCTCGTCTGTTGTTCTCGTTGTAAACGTTAGAATGCGAATGCTAGGAAGAAGCTCTGTAATGCATTTGATGTTTGATAGTAGGTTTTGCTGTAGTCATCAAGGGTGCCTTGGAGGGAGAGCTACACAGTGATAGAGCAGACAGGAGGTCTACAGAGGAGCAGGGAGCTCCACACACTCCAGGCCCCAGTGTACTGTGTGTCCAGTATAGTTAAGGAAGAAACATTAAAATTGTTTAACTGTTTTAACATGTATCCCACAGTTGTAGTTTGTAAAGAATTGAGCCACCTTGAACAGTCTGATTCAGAATAAACGTATAGCATCATGTAGCGTCTCAGGACTGTTATTGTGATAAACAATGTTGCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-Zscan21:NM_011757:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.777 A=NA C2=0.417
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0),PF034808=SBP_bac_7=PD(29.6=36.9)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=9.2),PF127602=Zn_Tnp_IS1595=WD(100=8.9),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: