HsaINT0188822 @ hg19
Intron Retention
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:13104]
Coordinates
chr7:99655321-99662663:+
Coord C1 exon
chr7:99655321-99655513
Coord A exon
chr7:99655514-99661410
Coord C2 exon
chr7:99661411-99662663
Length
5897 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TAATCTGCTTATTGTTTCAGATT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTCTCAACTCCTCCAAACGAACAGAAACCGGTGTGGGAGAAGATATCCTCCTCAGGAACTGCAAAGGAATCCCCGAGCAGCATGCAGCCACAGCCCTTGGAGACCAGTCACAAATACGAGTCTTGGGGGCCCCTGTACATCCAAGAGTCTGGTGAGGAGCAGGAGTTCGCTCAAGATCCAAGAAAGGTCCGAG
Seq A exon
GTGAGGACCACCCATTAGACTCCTATTCAGTGCCCCAGGCCCCTGTGGTTGGAGAAGCAGAATAATTAGTAATTCTTGGTTGTGAGGTGATTTCATAGATTGACTTGATTAGTTGGGCTGACTGGGTGGAAATAGTCCCCTTTCCTCCCCCAAGTAAGGCTGTCTTAACCTGGGCCCTAGCATGGGAATGGATCACTCTTAAAGGATCAGTTTCTCTTTGAAGTCTGAGTATTACAAATAATTTTTTTTAAAGGGTCAATTGAAATGAGTTTAAAAAAGAAACTGTTAACAGAGGTGTAGAGACTTCAAATGAACCAATAAGGAATAGTGTTGCACCAGACAACAGTGAAAAGCTGTTACTCCCTGTGAGCCTAAAGGGACAGAGGGGGACCCTCTTACCAGAATCAGGTAAGAGCTATAGTCATGGAGGAGGGGGTCACTTGATAGAAGTTGTGGCTGTAGGCCCTGCTGTGGGATGAGGAGAAAACGGAATAAATACCCCAACTGCACCCTCCTCCTGCCCTTAAATCTCCTGCTTTTGTTCCCCAATGACAAACTCAGTTGGCAGCCAGAGGGCAGGAAAGACAAGACAGTGCAGCCCTTAGGGTCAGCTTCCTGGGGCACAGGGCGGGTCAGAGAATGGATCTGAGAAGGGCAAATGGGAAATAATTGGCAACCTCCTTTCTGAAGCTATGGAAAGAGGTGGGGCATTTTTCACAAGTCAAAGCTGTATTAGGTGACTACTCCTGAGCTCAAATCTCCATATATTATGGTTTATAGAATAATCTCAGGCCATAAATGGTCATCCCCTGTGGGGGTGTTTTTGTGTGTTTTTCTGAGACAGGGATTCCATCCGTCATCCAGGCTGGAGGGCAGTGGCGTGATCATAGCTCACTGCAGCCTCAATCTCTGGGGCTCAAATGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACCACCATGTCTGGCTAACTTTATTTTTTTGTACAGACAGGGTCTCACTATGTTGCCCAAGCTGGCCCTATGTTATTTTGTTATTTTATGGGTTCTACTCTTAAGTACCTTCATTTACCAGAAGGATTAGAACTAAATCTTTGAAACAGAGTTAATGTTTAATTATATGTTTGCAAAAATATGGCATATTATTCCAAATCCTAATAGTTTCAAACCAGGACTTTGCTTACGTGTTGGTGGTGTAGACCACTATTTATGTGTGTGGTGTGATTTCATGACAAGAGTCCATGGCCCTCAGAAATCTCCCTCCATGCTTGCTGTGTCTGAAACGTGAAACTCCATCATGGAAACAGAGTTTCGAGCCGGTTAAAAATCACATTTTCTAGGAAAAGTAAAAAATTAAACTGTTAGCTAAATTCTTCATGGTTTATGGTGAACACAGTAGACCTCTCCAGGCAATTGGGGTTTCCCCAGAGTTGCCACAGTAATTAGAGATAAAAATAGCCGGAGACCTATCTGGTCAGTTTTATTTTCCATATCTCTTGGTGTAGCCCCTTGGCAGTATTACACAAAGAGGAGGGTGGAGTGGAAGGATTATCAGAGCCAGGAACAGGCTTGGGTTTTAGTACCCAGATGGGACAGAAGACAAAGCTGCTGGGCCCTCCTAAGGAAAGGGAAGTTGGCTGTGAAAGCTTTGCATAAAGTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCCCTCTGTTGCTAGGCTGGAGTGCATTTATGCAATCTCGGCTCAGTGCAACCTCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGAACTACAGGTGCACACCACCACGCCCAGCTCTTTTTAAAAAAACAGAGTTTCGGTCTTGTTGCCCAGGCTGGAGTGCAGTGGCGCTATATCGGCTCACCGCAACCTCCGCATTCCAGTTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCTTCTGCTACCATGCTCGGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGACCTCATGATCCGCCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAAGAAACTGTTAATAAAAACACAAACAGGCACCTTTGACAGAAACAAAATAGAATTTCTAAAAGTGAAAACTGTAGTCATTGAAATGAAGAATGCAATGGCTGTTTTAAATAATGAAGGACATGATTAGCAAACAGAGGTAGATGGAAGGAAGTCATCTGAAATGCTACTTAGAAAGATCAAGGTGGCAGGCATTGGACATCAGTGTGGGATCAGATGAGAAGGTCCAGTGTATGTTTAATAGCTGTTCCAGAGGAGGCGGAAAGAGTTGGAGAGGGCAGACATGATGGCTCACACCGGTCATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCATGAGGTCAGGAGATGGAGACCATCCTGGTCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGTTGGGCGTGGTGGCATGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAAGCCAGGAGGCGGAGATTGCAGTGAGCCAAGATCGCGCCATTGCACTCCAGCCTGGCAACAGAGTGAGATTCCATCTCAAAAAATAAAAAAAAAACCAGACTGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAACACTTCGGGAGGCTGAGGCAGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATAGTGAAACTCCATCTCAACCGGGCATGGTGGCACGTGTTGTCCCTGGGACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATCGCTTGAACTTGGGAGGCAGAGGTTGCAGTAAGTCAAGATCGCGCCACTGCACTCCAGCCTGGCGCAACAGAGTAGGACTCCGTCAAAAAAAAAAAAAAAAAAAACATTTCTACTAAAAATACAAAAATTAGTCGAGTGTATTGGTACACGCCTGTAGTCCCAGCTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACCTGAACCCAGGAGGTGGAGGTTGTGGTGCAGCAGTGACCTGAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCGGGTCTCAAAAGTAACCAAGACATAAAAGACGGATTACCCCCCTCAAAGGAATGCTGATTAGACTGATGACAAACTACCCAACAGTAACAGTGCAGCCTGGAAGACAATGAAATAAATAGTCCTGGTAAATTCTTTTTCAATTTTTGCCTCATTCAGCTATTTTTTAAAATGTTAACTTTTGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATTTGAGGCCAGGAGTTTGAGGCTAGCCTGAGCAACATGGTAAAACCCCATTTGTACAAAAAATACGAAAATTAGCCAGGTGTGGTGGCTAGTGCCTGGGGTCCCAGCTATTCGGGAGGCTGAGGCAGGAGGATCATTTGAGCCTGGGAGGTGGAGGTTGCAGTGAGCTAAGATTATGCCACTGTACTCCCACCTGGGCAACAGAGCCAGACTCTATCTCAAAACAAAACAAAGTTTATGAGGTTACTTCTGTCCCACACATGTAGTCCATGGCTGTCCAGTGACTCGAAGAGAAGTCTGTGTGTAGGCAAGCGATTGCTAATTATGGAGAGTGTGAAGGACTTCAGCTGCTGAAGCTCTGACCCCCAGCAGATGGTGAGGAGAGGGTGAGCCTGGAAGCAGCTGATAGTCACTGTCAGCAAAGGAAGGAGATAGACAGCTGGGCAGAGAGAGAGAAGCTGTCAGGGCGGTTCCTAGGGAAGGGGAAACGGGTGAAGAAGGTAGCTTGCTGACAGGCTTCTGTACCCTCAGAGGACTAACAGTTCTCCAAGGGGTCCCATTTTTCAGAGCGAATTTCTCTTACTCCCCTTTTCCCTGATGTGGATGGCCAGGTGGACTTTGAAGAGGTGTGACTGCCTGGTGAGGCGTTCTAAAAAGATAAACTGGTTCCATCTGATTTTAATAGTGAGCGTCACTTTATAACTGAATTACAAGATGTAGCCAGTGTAAGTAAATGATGAGCGTGAAGCCCTCTTGGAGATCACGTGCTTTCATTCTGATTGATACGGATCTGGGGCGGGAATGATTGTAAATGGTCAGAATGCCCTCTGATTGCTTTTATGTTCAACTGCTGTGGGAACATGGGTTTTTGTGAGTTTGCCACTCAGCCTCATCCTTAATTGTCCTTGTCATTTTCCTTAACCCTGGCCCTGCAGCAGTCATTCTCCCTTGTTTTTAATCTGCGTGAGGCTCAACTGTTCTTTTTTTTTTTTTTTTTTTTTTTAAAGGGCCGGGTGTGGTGGTTCATGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCTAGACCAGCCTATGGTCTAGAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATAAGCCGGGCATGGTGGCACATGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCTGAGATTGAACCATTGCACTCCAGCCTGGACAACAGGAGCAAAACTCCATCTCAAAAAAAAAAAAAACATCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACGTGGATCACCTGATGTCAGGAGTTTGAGACCAGCCTAGCCAACATGGTGAAACCCCATCTCTATTAAAAATACAAAAATTAGCTGGGCGTGGTGCCAGGTGCTTCTAGTCCCAGCTCTTCGGGAGGCTGAGTCAGGAGAATCACTTGAACCCAGGAGCGGAGACTGCGGTGAGCCAAGATGATACCACTGCACTCCAGCCTGGGCAACAGAATGAGACTCCGTCTCAAAATAAATAAATAAAATAAATATTTTTTTAAAGATAGGGTCTCACTCTGTTGCCCAGGCCAGCACAATCATGGCTCACTGCAGTCTTGACCCATTGCAGCCTTGACCTTCCAGGCTTAAGTGATCCTCTTATTCAGTCTCCCAAGTAGCTGGGACCACAGGGGCACACCATGCCCACCTAATTTTTTTATTTTAACTTTTTGTAGAAATGGGGTCTCCCTATGTTGCCCAAGCTGGTCTTGAACTCCCAGACTCAAGCCATCCTCCCGCCTCAGCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCTGTGCCCGGCTACCACTCTCATATGCTGCATTTTGCCTTCTGTATGTGAAGCTGTTTTTCTGGCAGAAAAAGCCACGTTCTCTTCACATCTTAATAGCTTCGGGTGGGGAATTGTGTGAAAGTGTGGTATGGAGGCCAGGCCTGGTGGCTCATGCCTATAATCCCAGCACTCTGGGAGGCTGAGGCAGGCGGATCACCTGAGGTCAGGAGATCAAGACCATCCTGGCCAGCATGTTGAAACCCCATCTCTACTAAAAAAAAATACAAAAAATAGCTGGGTGTGGTGGCACGTGCCTGTAATTCCAGCTACTCTGGAGGCTGAGGCAGGAGAATCGCTTGAATCAGGGAGTTGGAGGTTGCAGTGAGCTGAGGTCACCTGCATTCCAGCCTGCTGACAGCGAGACTCCATCTCAAAAAAAAAAAGAAGTGCAGTATTGTAAACTAGATTGGATGCTGATTTACTTGTATCTATGCGCTATCATGAGCTCTGTTTAGTCACCCTTCAGAAACCATCAGTCTCACCTGATGGTTCTATCTCTCTGGTAACAGTTTCTTCCTCAGAACAAGAAACAACTGAAGTATCCTTAATCTGCTTATTGTTTCAG
Seq C2 exon
ATTGCAGATTGAGTACCCAGCACGAGGAATCAGCAGATGAGCAGAAAGGTTCTGAAGCAGAGGGGCTCAAAGGGGATATAATTTCTGTGATTATCGCCAATAAACCTGAGGCCAGCTTAGAGAGGCAGTGCGTAAACCTTGAAAATGAAAAAGGAACAAAACCCCCTCTTCAAGAGGCAGGCTCCAAGAAAGGTAGAGAATCAGTTCCTACTAAACCTACCCCAGGAGAGAGACGTTATATATGTGCTGAATGTGGCAAAGCCTTTAGTAATAGCTCAAATCTCACCAAACACAGGAGAACACACACTGGGGAGAAACCTTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTCACCCTCCACTACAGAACACACTTGGTGGACCGGCCCTATGACTGTAAGTGTGGAAAAGCTTTTGGGCAGAGCTCAGACCTTCTTAAACATCAGAGAATGCACACAGAAGAGGCGCCATATCAGTGCAAAGATTGTGGCAAGGCTTTCAGCGGGAAAGGCAGCCTCATTCGTCACTATCGGATCCACACTGGGGAGAAGCCTTATCAGTGTAACGAATGTGGGAAGAGCTTCAGTCAGCATGCGGGCCTCAGCTCCCACCAGAGACTCCACACCGGAGAGAAGCCATATAAGTGTAAGGAGTGTGGGAAAGCCTTCAACCACAGCTCCAACTTCAATAAACACCACAGAATCCACACCGGGGAAAAGCCCTACTGGTGTCATCACTGTGGAAAGACCTTCTGTAGCAAGTCCAATCTTTCCAAACATCAGCGAGTCCACACTGGAGAGGGAGAAGCACCGTAACTTTCAAGCGCTCCTGTTGTTGTCGTTGTTTTAAACTTTAGAATCTGAAAACCAGAAAGAAGTCTTGTCATTGCAGCAGCATCGATTCCGGTGATAGAGTTTGTATCACTCAACATCAGGGGATGCCTGAGGAGTGCGAGCTCCACAGCAACATGGCAGGCAGGAGGTCCTCAGAAGGTGTCAGGAGGTTCCACACTCGCCAGTTCACTGGAGCAGAGTCCCTTCGCCACACTTAGGGTCCCAGTAAGCCATGCCAGCATTACCTTTTGCGTAGTTAAACAGACGTGTATCCAGTCTAGTTAAGGAAGAAACATTAAGATTGTTTAATTTTTAACATATATTCAAGAATTTTAATTTGTAAAGAATTGAGCCACATTGAACACAATTGAATGAGATTCAGAATAAACTTATAACATCTTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529-ZSCAN21:NM_145914:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.440
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0),PF034808=SBP_bac_7=PD(28.8=47.9)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF127602=Zn_Tnp_IS1595=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)