DmeALTD0004073-2/3 @ dm6
Alternative 5'ss
Gene
FBgn0264384 | CR43836
Description
The gene long non-coding RNA:CR43836 is referred to in FlyBase by the symbol DmellncRNA:CR43836 (CR43836, FBgn0264384). It is a non_protein_coding_gene from Dmel. It has 4 annotated transcripts. Gene sequence location is X:8972908..9048991. Its molecular function is unknown. The biological processes in which it is involved are not known. 33 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:9048414-9048897:-
Coord C1 exon
chrX:9048797-9048897
Coord A exon
chrX:9048794-9048796
Coord C2 exon
chrX:9048414-9048729
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGTAGGT
5' ss Score
2.71
3' ss Seq
TTATCTGTTTGTTATTTTAGATA
3' ss Score
9.45
Exon sequences
Seq C1 exon
ACAAATATTCATTTTATTCAAACGAGACACATTATTTTAATAAGTTCTTGCATAAGAAATCATATCGCAACCAGATACTCAACATTACCAACAATTAAAAT
Seq A exon
GTA
Seq C2 exon
ATATGCTGAACTGTACACCTTTCGTTGCAGAAGAAACGCGAGCAAGTGAGGCACTGAATGAAATGTAAAAGCTATTAACTCCCTAATTTAGTTCATATGAAAAGTGGCAACCATGGCCTAAGGCAATCTAAATTCCACTGGAAGCACATTCTTCCATAAATGGTTAATCCGAAATAGCCATCCGTTATACCCGTAATACCCTGTAGCAAGTAACATAAGCAGGCGATGTTTCACCTACATAGCAAAGTGTACACAGATAACATAAACACACCGAACAGAACAGGAAAACAAGAAGGAGCCGAAGGAGAAGGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264384-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAACCAGATACTCAACAT
R:
ATTCAGTGCCTCACTTGCTCG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)