DmeALTD0008743-2/2 @ dm6
Alternative 5'ss
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16518805-16521813:-
Coord C1 exon
chrX:16521626-16521813
Coord A exon
chrX:16521623-16521625
Coord C2 exon
chrX:16518805-16518837
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATT
5' ss Score
5.8
3' ss Seq
AAATCCGAATCTTCTTTCAGCCG
3' ss Score
5.16
Exon sequences
Seq C1 exon
GCCTTGGAAATCTAAGGCTCTCATCGTTGGCCGCATAGACAATGACAGAAGATTCCGACTCGATATCTGAGGAAGAACGCAGTTTGTTCCGTCCCTTTACCCGCGAATCATTGGTGCAAATCGAACAACGCATTGCCGCTGAACATGAAAAGCAGAAGGAGCTGGAAAGAAAGAGAGCCGAGGGAGAG
Seq A exon
GTG
Seq C2 exon
CCGCAATATGGTCGCAAGAAAAAACAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-9-9,10-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.734 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0311217
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292711, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGAACAACGCATTGCCG
R:
TTTCTTGCGACCATATTGCGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)