DmeINT0035098 @ dm6
Intron Retention
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16518805-16521813:-
Coord C1 exon
chrX:16521623-16521813
Coord A exon
chrX:16518838-16521622
Coord C2 exon
chrX:16518805-16518837
Length
2785 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATT
5' ss Score
5.8
3' ss Seq
AAATCCGAATCTTCTTTCAGCCG
3' ss Score
5.16
Exon sequences
Seq C1 exon
GCCTTGGAAATCTAAGGCTCTCATCGTTGGCCGCATAGACAATGACAGAAGATTCCGACTCGATATCTGAGGAAGAACGCAGTTTGTTCCGTCCCTTTACCCGCGAATCATTGGTGCAAATCGAACAACGCATTGCCGCTGAACATGAAAAGCAGAAGGAGCTGGAAAGAAAGAGAGCCGAGGGAGAGGTG
Seq A exon
GTAATTATTTCTAGCTGGAATGTGCTTAGCTTTCTCGATTTTGTGTGCCTACTCTACTACTCTTTCTGTATCTGTATCAGTAACTGTAACCGTATCCGTATACGTATATGTAACCATATCAGTATGTGTATCTCTCTCTACTACGTCTAAGTGAATTGACTTCCAATTGAGATCGAATGCCAAACGGTCGATGCTGATCGCTGATCGATTAAAGATCAATGATCATCGATGGCCGATAATCAATAACCGATTGCCGCTACTGTGCGCTTATGTTCGTGCTTCAACTTAAGCCTGAACGTCTATTTTATATAATATACATATATAACAAATACTCGAATATGTTCTACCTACTAACCCCATGCATACATATCCACCCGAAGTTATCAACATGAAAAGAAACCATCCAACTCACAAGCAGTCATCCTCCGTGTATACGTATCTGTATATCGAATGCCTCTGTGTCTACAGTTCTCTTTATATAACCCATTTAAACCCCTTCAGTATGTCATATCCGCCTCTGTAAATGCAGCTACTAACCATCGAATCCATCTCGTTATACGTATCTCAGAGTCACGTCACATTAATCCACTCTGCTTGAGCCCCAGCCATCCAATCCGTAAACCCAAATGCAAACCAAGCAGATCTTATCTATCTCTCTCTACATATCGCTCTCTCTCTCTCTCTCTCCCTCTGACCCATCTAACTGGACCGCAACTATTAACTACCAACTGCATACTGTCTATTCTGTCTATTGTTTTCCGTAATCTCAGCCAGCATTTCACCTACTTTTATCGTAGCTAAAAACCTCATTGCAACTGAACTCAAGTACCTGAAACTAGAACAGCATATGTCCACCCACCGACCTTCGTTTCGTTTCTAAGTTTATTCTCTTCATTTTTATTTTCAACAAAATTCCAAAACGTAAAAGTGTCTAAAAAGTATAGTACAGTGATTTACTTCTTTGGTTGTATGTACTCGTATTTTGTATTCAGCATAATGTACCCCAAAAATCTCCACCAAACCCAATTACCTATATGCTCTGTACGTACCGATATCGTAACGTATTACTATCGAATCTGTAAAATTCTTTCCTGTCATATAATCGTTGTATGTTTGTTCGTTTGTTGGTTTGTTTACTTGTTTTATCTATTTGAGAGTAAGAACTGTGTTTTCTGTAACCCATTGGCTTCGTAATGTGTTCTAATGTGTATCCTAATTACGATTACCTAATCAATTGTTTTGTATTATTGCGTAAACATATATCATTTTCAATGCCAGCAGCAACCCAAAAACGATTTAACATTATCATTGTCGTATCGTTATCGTATTCTACTTATCGACGGCTACAAATTCTTAAGTTATATTCTTCATTTTCGTTTCGATTACTTTCGATTTCATTTAACCAGCTTCAACGGCTTGGGTATAGAAACCACTGGCCACGTCTACGTCCATGTCCATGTCCATGTCCATGTCCATGAAACCCATGACCCTTGTCTCAGCACAAATCTTTAGCAAATCTTCAGGTATCTTGTCCTGTAAATAGTCCACTCGCCTGTGAATACGTGTATCAAAACTCGATAGCTGTGTTTATTGCCAATCATTATTGCCAGTACTCAGTTTCAAAATCAGACCATTAACAATCGAATCATCAAGAACTTACAAAAATGGAGTCGAAAATAAAATAAATACTGATGTATTAAATAATACTATTATGATGGAGGCTTACAAGAAATCGAATAACTTCGAATAATGAAAGTGATATTATTTCAATTACAAATCGGACAAGTTAAAGCAAGAAAGCTATTTGCTACATCACTAAAAAAAAAACAAAGCAAAGGACCAAACTTATATTCTACGTATGTAAGCCATGAAACAAAGCAAAAAACCGGAAATTTAAAAGCCAACTTTTGTAGTTGAAGCACCAACATTGCCAACGAGCATATCTACCATCATGGATCCATTAAAAAGTATAGCTTAATCGACCCAAACTGATCGTAGCCACAAGCTGCCTGCTATGAAATCTTGTAAAAACCATTCAAGCGCATTGTCATAAGTCATCTCTACACATAGAAAAGCCACGACTTAGCCCATGCGCACCTCAACTAACTTTCAACTCTTAAATTTCAACTTTAAACCTAGCTCTGTCTCTATGTCTGTCCCTCTCTGACCTCTGATCTCCCATTTAAATACACCCAGTCACAGATGCAACACAGACTCAACTACACTAGCTATATGAATAAATTCAGAATACAGAATACACTGCTCATCATTCATGATATTTGCATTGCGAGGATGCGCAAATGAAATTATTAGGGATAGCCAATATCGTATTCGATATCGTATACGATTATTCCCGTATATGTATTATCCCCTGACATATTGCTGAAAAACTGCTCGCCTACATAACCACTTTCTACCGTTTGTTTTTTCTTTCGTGTACTCTTCTTCCGTTTCATTTACAACTTTCTCTCTACTTTTTGAACGCTCTCTCTCAACGAAACTTTTGCGCGCCGCTGTCTGGACCAAAAATGAATATTACCATGATTATAAATATATAAATATACTGTATAAAAACGATCAACAATGAATGACAAATGCGAATTCGGCGCTTGCATAATGCAATCAAAAACAAATTACGAAATACCAAAACAAAATCAAAATCAAAACCAAAATCCAAATCGAACATGAACTTTTCTCGACTACTACTACGCTACTTTTTACTTGAACTTGATAATGCTCGTAATGAATGCCCTAAACCAAATACCAAATCCGAATCTTCTTTCAG
Seq C2 exon
CCGCAATATGGTCGCAAGAAAAAACAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255:FBtr0074298:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0303597
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292698, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0309614
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)