DmeEX0009014 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16514029-16521813:-
Coord C1 exon
chrX:16521623-16521813
Coord A exon
chrX:16518805-16518837
Coord C2 exon
chrX:16514029-16514184
Length
33 bp
Sequences
Splice sites
3' ss Seq
AAATCCGAATCTTCTTTCAGCCG
3' ss Score
5.16
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GCCTTGGAAATCTAAGGCTCTCATCGTTGGCCGCATAGACAATGACAGAAGATTCCGACTCGATATCTGAGGAAGAACGCAGTTTGTTCCGTCCCTTTACCCGCGAATCATTGGTGCAAATCGAACAACGCATTGCCGCTGAACATGAAAAGCAGAAGGAGCTGGAAAGAAAGAGAGCCGAGGGAGAGGTG
Seq A exon
CCGCAATATGGTCGCAAGAAAAAACAAAAAGAA
Seq C2 exon
ATCCGATATGATGACGAGGACGAGGATGAAGGTCCACAACCGGATCCTACACTTGAACAGGGTGTGCCAATACCTGTTCGATTGCAGGGCAGCTTCCCGCCGGAATTGGCCTCCACTCCTCTCGAGGATATCGATCCCTACTACAGCAATGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.909 C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0292703
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292698, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0309614
Other Skipping Isoforms:
FBpp0288560, FBpp0292675, FBpp0292697, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292711, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0311217
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGCAAATCGAACAACGC
R:
TGGACCTTCATCCTCGTCCTC
Band lengths:
117-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)