DmeEX6012007 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG15117 (FBgn0034417). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (5 unique). Gene sequence location is 2R:19122231..19129300. Its molecular function is described by: carbohydrate binding; beta-glucuronidase activity. It is involved in the biological process described with: glucuronoside catabolic process; multicellular organism reproduction. 9 alleles are reported. The phenotypes of these alleles manifest in: trichogen cell; mesothoracic tergum. The phenotypic classes of alleles include: partially lethal - majority die; some die during pupal stage; fertile; visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, in adult male stages.

Coordinates

chr2R:19122910-19123438:-

Coord C1 exon

chr2R:19123295-19123438

Coord A exon

chr2R:19123148-19123232

Coord C2 exon

chr2R:19122910-19123086

Length

85 bp

Sequences

Splice sites

3' ss Seq

CACTTACTTTATCCTTGCAGATT

3' ss Score

9.94

5' ss Seq

GCGGTAAAT

5' ss Score

6.76

Exon sequences

Seq C1 exon

AAACTTTAGCCAGGAGCTGCTGGGCAAGCACAAATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCCAAGTGTGGTGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGAGTGCGGATTCGTACTTTGA

Seq A exon

ATTAGTGGCCAACTTCACACGGTCTCTGGATAAAACCCGACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAAGGCG

Seq C2 exon

GGCCGCTCTCTGGACATCATCAGCTTCAATCGCTACAATGCCTGGTACTCAAATGCCGGACGTCTGGACATGATAACCCAGAATGTGATCGACGAGGCCATTGCCTGGAATAAACGCTACAACAAACCCATTATCATGTCTGAATATGGAGCAGATACCTTGGAGGGCTTGCATATG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0034417-'9-11,'9-10,11-11=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features